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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G054080
Reference: TK1151 Chr: Chr08 Coordinates: 13862726-13867361 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2847 bp · TkA08G054080|TK1151|cDNA

TTTAATGTTGGAAAAGTTCGCCTGAAACACAATGAAGGGGGTGGATCTTGAGAGCGTTGAGATCGACCCTATGGACCAAAAATCTTTTGCAACAAATGTAAAAGATCGAGCATCAAAACGTGTCGACAATGGAGGCAAGCCAGGCGGTTTGTTACCAATGTTGAGCCGCAACTCCAGTAAGGCAAAATCTAACACAAAAAAGGCGCCCACTACTGGTGGGGCCCCTAAGATGGGACGAACAACCTCAAGCGCAGCCAAAG...

CDS

Download CDS FASTA

1020 bp · TkA08G054080|TK1151|CDS

ATGAAGGGGGTGGATCTTGAGAGCGTTGAGATCGACCCTATGGACCAAAAATCTTTTGCAACAAATGTAAAAGATCGAGCATCAAAACGTGTCGACAATGGAGGCAAGCCAGGCGGTTTGTTACCAATGTTGAGCCGCAACTCCAGTAAGGCAAAATCTAACACAAAAAAGGCGCCCACTACTGGTGGGGCCCCTAAGATGGGACGAACAACCTCAAGCGCAGCCAAAGGGCTTAACAGCTTGCGGTTTCTTGATAGGAC...

Protein

Download Protein FASTA

339 aa · TkA08G054080|TK1151|PROTEIN

MKGVDLESVEIDPMDQKSFATNVKDRASKRVDNGGKPGGLLPMLSRNSSKAKSNTKKAPTTGGAPKMGRTTSSAAKGLNSLRFLDRTVTGKEGDAWRAIERRFNQFSVDGKLPRDKFGICVGMGDSIEFAGELYDAMSRRRNIDGEIGLTKDQVRSFWEEMTKKDLDARLSIFFDMCDKNGDGILSEDEVKEVLIMSASANKLSNFKNQAGTYAALIMDELDPDHRGYIEMWQLEILLTGMVSNDQTKPQLTNIKKKNED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G054080
TK1151 IDTkA08G054080
OH-1004 IDLXL04_017720
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 98.820 / OH-1004 39.692
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G054080
LocationChr08:13862726-13867361 (-)
DescriptionSimilar to RBOHH: Putative respiratory burst oxidase homolog protein H
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g60010 Calcium-dependent NADPH oxidase that generates superoxide. No verified direct reference in this release
At3g45810 Calcium-dependent NADPH oxidase that generates superoxide. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q6J2K5 Calcium-dependent NADPH oxidase that generates superoxide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017720 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002679 respiratory burst involved in defense response Biological Process
GO:0006952 defense response Biological Process
GO:0007231 osmosensory signaling pathway Biological Process
GO:0009060 aerobic respiration Biological Process
GO:0009653 anatomical structure morphogenesis Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010053 root epidermal cell differentiation Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0033198 response to ATP Biological Process
GO:0033500 carbohydrate homeostasis Biological Process
KEGG gene cross-reference
ath:AT1G64060
ath:AT3G45810
ath:AT5G51060
ath:AT5G60010
sot:102603596
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.607
Rank 1 · TkA08G054080 · TK1151
Cytoplasm0.155
Rank 2 · TkA08G054080 · TK1151
Endoplasmic reticulum0.135
Rank 3 · TkA08G054080 · TK1151
Nucleus0.096
Rank 4 · TkA08G054080 · TK1151
Golgi apparatus0.067
Rank 5 · TkA08G054080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08414NADPH_Ox66-168 aa
PF13405EF-hand_699-111 aa
PF13499EF-hand_7140-169 aa
PF08671SinI146-157 aa
PF23564EF-hand_FSTL1162-210 aa
PF30624EF_SSP120171-231 aa
PF13499EF-hand_7172-230 aa
PF13405EF-hand_6173-194 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G054080PF08414NADPH_Ox661682.4e-32112.0
TkA08G054080PF13405EF-hand_6991117.2e-0832.2
TkA08G054080PF13499EF-hand_71401692.1e-0731.9
TkA08G054080PF08671SinI1461570.1412.6
TkA08G054080PF23564EF-hand_FSTL11622100.01816.1
TkA08G054080PF30624EF_SSP1201712310.1913.1
TkA08G054080PF13499EF-hand_71722302.1e-0731.9
TkA08G054080PF13405EF-hand_61731947.2e-0832.2
TkA08G054080PF00036EF-hand_11731943.6e-0626.8
TkA08G054080PF13202EF-hand_51731930.03814.2
TkA08G054080PF13833EF-hand_81731930.08513.3
TkA08G054080PF27160Y4kK_N1782290.212.8
TkA08G054080PF08414NADPH_Ox1791992.4e-32112.0
TkA08G054080PF15370NOPCHAP11982350.1813.0
TkA08G054080PF13833EF-hand_82162290.08513.3
TkA08G054080PF00036EF-hand_12172303.6e-0626.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJD6Arabidopsis thalianasp|Q9FJD6|RBOHH_ARATH Putative respiratory burst oxidase homolog protein H57.900%Swiss-ProtHigh
Q9LZU9Arabidopsis thalianasp|Q9LZU9|RBOHJ_ARATH Putative respiratory burst oxidase homolog protein J47.800%Swiss-ProtMedium
Q6J2K5Oryza sativa subsp. indicasp|Q6J2K5|RBOHB_ORYSI Respiratory burst oxidase homolog protein B44.300%Swiss-ProtMedium

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