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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G044290
Reference: TK1151 Chr: Chr08 Coordinates: 11287700-11291977 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3259 bp · TkA08G044290|TK1151|cDNA

CAAAGATATAATTTAAAGAATCAATTGTGGAATCGTGGTGTGCAAAATGTAGCCTCAGATACTCGTGCAAAATGTAGCCTGACACGATGCATTTGAGAATTGTTTAATTACAAATTTATTTTAGGGAATCAAATTGAGCAAAATTTTATCTATATTGTCCGATGTTTACAAAAACACGAAGGAAAAACGAAGGCAGAAACTTCAATGGTCCACAAATCTTCTTCAACCTCCATCCTCTCTCTCTCCCTCTGAGATAATTG...

CDS

Download CDS FASTA

2220 bp · TkA08G044290|TK1151|CDS

ATGGCAGCTATTGAAACGCTTCGACCTATAATTCACGGTCAAATCCATGTAAACTCTTCGAATTACAATTCAAAACATTCATACAGGCACACTTCTTTCGTAGATAGATTCCATGTCCTACATAATAAGTCGAATGTTCTTGTAACCAAATCGTCATTATCCATTCGTCCAGCCACCAATTTGTACAGAGAATCTAGGGTTTTCAATTTAAATTCATGGTGTGGAGGGTCAGGGTTTCTGAAGATGAATCAAAACTGTAG...

Protein

Download Protein FASTA

739 aa · TkA08G044290|TK1151|PROTEIN

MAAIETLRPIIHGQIHVNSSNYNSKHSYRHTSFVDRFHVLHNKSNVLVTKSSLSIRPATNLYRESRVFNLNSWCGGSGFLKMNQNCRRRNKLGVNNTSCEHDTESSGQKSESDSNKVSKKREKGDKKGKGGGWGWGKGGGKWTWQPIIQAQEIGVLLLQLGIVMFVMRLLRPGLPLPGSEPRVPTAFVSVPYSDFLTKVSTNQVQKVEVDGVHIMFKLKQEQGTPESDITSSLNKMQDSELLLRTVAPTKRIVYTTTRPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G044290
TK1151 IDTkA08G044290
OH-1004 IDLXL04_017872
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 97.023 / OH-1004 86.804
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G044290
LocationChr08:11287700-11291977 (+)
DescriptionSimilar to FTSH9: ATP-dependent zinc metalloprotease FTSH 9, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g58870 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
At3g47060 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0649700 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017872 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0004176 ATP-dependent peptidase activity Molecular Function
GO:0004222 metalloendopeptidase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
amr:AM1_D0237
ath:AT3G47060
ath:AT5G58870
dosa:Os02g0649700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.923
Rank 1 · TkA08G044290 · TK1151
Mitochondrion0.079
Rank 2 · TkA08G044290 · TK1151
Nucleus0.030
Rank 3 · TkA08G044290 · TK1151
Cytoplasm0.020
Rank 4 · TkA08G044290 · TK1151
Cell membrane0.013
Rank 5 · TkA08G044290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20720nSTAND313-62 aa
PF06480FtsH_ext162-247 aa
PF00004AAA210-275 aa
PF01078Mg_chelatase328-364 aa
PF13191AAA_16372-410 aa
PF05496RuvB_N376-450 aa
PF06068TIP49376-412 aa
PF07728AAA_5377-500 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G044290PF20720nSTAND313620.03914.4
TkA08G044290PF06480FtsH_ext1622475.8e-0627.2
TkA08G044290PF00004AAA2102751.8e-44152.1
TkA08G044290PF01078Mg_chelatase3283640.0813.0
TkA08G044290PF13191AAA_163724103.4e-0525.1
TkA08G044290PF05496RuvB_N3764500.000720.1
TkA08G044290PF06068TIP493764120.001119.0
TkA08G044290PF07728AAA_53775000.0001422.6
TkA08G044290PF00004AAA3785111.8e-44152.1
TkA08G044290PF13401AAA_223784330.0004521.3
TkA08G044290PF07724AAA_23784560.001819.1
TkA08G044290PF13173AAA_143784480.00517.5
TkA08G044290PF20720nSTAND33784430.03914.4
TkA08G044290PF13671AAA_333784050.06214.3
TkA08G044290PF01078Mg_chelatase3783960.0813.0
TkA08G044290PF13207AAA_173814580.0116.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FIM2Arabidopsis thalianasp|Q9FIM2|FTSH9_ARATH ATP-dependent zinc metalloprotease FTSH 9, chloroplastic70.800%Swiss-ProtHigh
Q9SD67Arabidopsis thalianasp|Q9SD67|FTSH7_ARATH ATP-dependent zinc metalloprotease FTSH 7, chloroplastic82.100%Swiss-ProtHigh
Q6H6R9Oryza sativa subsp. japonicasp|Q6H6R9|FTSH7_ORYSJ ATP-dependent zinc metalloprotease FTSH 7, chloroplastic78.500%Swiss-ProtHigh

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