TkA08G034520 | RubberDandelionOmics

Gene overview

TkA08G034520

Reference: TK1151 Chr: Chr08 Coordinates: 8794193-8801859 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3415 bp · TkA08G034520|TK1151|cDNA

GGGTGGTATCTCATCGAGGGAAGGGTGTGTGGTGAAGTATAAAGAGACACTCATACACCTCAGGTGTAGAAAACCCTTTCCTCAACAAAACCAAATCTCTCTCTTTCTCTTTGGGGTTTGAGTACAATTCAAACTCCATTGATTCTCTCTCTTCATTATAACCTACTGGAGCTGCTCATTCATTAATTTCCCCCAAGCAACACATCTCTCCTGCTCTTTGATTCCTCGGCGTAGTCGCCGCCGCCGCCCAATCGGTGTTG...

CDS

Download CDS FASTA

2088 bp · TkA08G034520|TK1151|CDS

ATGGCGGTGGAAATCGTCGTCATGTATCCAATCCAGAAAAGGCCGTACAGGAGCGGAATCGACAACCTCTTGGTTCTGTTGATCGGTGGAATCCCAATCGCTATGCCGACTGTGCTTTCCGTCACCATGGCTATCGGATCTCACAGGCTTTCACAGCAAGGTGCAATTACCAAGAGGATGACTGCGATTGAAGAAATGGCGGGAATGGACGTACTTTGCAGTGATAAAACAGGGACGCTTACTCTTAACAAGCTTTCTGT...

Protein

Download Protein FASTA

695 aa · TkA08G034520|TK1151|PROTEIN

MAVEIVVMYPIQKRPYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKEQVLLFAARASRTENQDAIDAAIVGTLADPKEARAGIREVHFFPFNPVDKRTALTYIDERGDWHRTSKGAPEQILTLCGCKEDLKKKVHAMIDKFAERGLRSLAVARQEVPEKSKDSAGGPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G034520`
TK1151 ID	TkA08G034520
OH-1004 ID	LXL04_017998
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 72.851 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G034520

Location Chr08:8794193-8801859 (+)

Description Similar to PMA4: Plasma membrane ATPase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30190`	The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport.	Mechanism of proton transport by plant plasma membrane proton ATPases.2003 · DOI: 10.1007/s10265-003-0111-9 The effect of a genetically reduced plasma membrane protonmotive force on vegetative growth of Arabidopsis.2012 · DOI: 10.1104/pp.111.189167 Abscisic acid suppresses hypocotyl elongation by dephosphorylating plasma membrane H(+)-ATPase in Arabidopsis thaliana.2014 · DOI: 10.1093/pcp/pcu028 The plasma membrane H(+) -ATPase AHA2 contributes to the root architecture in response to different nitrogen supply.2015 · DOI: 10.1111/ppl.12305 Phytosulfokine Regulates Growth in Arabidopsis through a Response Module at the Plasma Membrane That Includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1.2015 · DOI: 10.1105/tpc.15.00306 Direct observation of proton pumping by a eukaryotic P-type ATPase.2016 · DOI: 10.1126/science.aad6429
`At2g24520`	The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0656100`	The plasma membrane ATPase of plants and fungi is a hydrogen ion pump.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017998 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0051453 regulation of intracellular pH Biological Process

GO:0120029 proton export across plasma membrane Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008553 P-type proton-exporting transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G24520

ath:AT4G30190

dosa:Os04g0656100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.515

Rank 1 · TkA08G034520 · TK1151

Endoplasmic reticulum0.193

Rank 2 · TkA08G034520 · TK1151

Cytoplasm0.119

Rank 3 · TkA08G034520 · TK1151

Golgi apparatus0.117

Rank 4 · TkA08G034520 · TK1151

Lysosome / Vacuole0.088

Rank 5 · TkA08G034520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00702Hydrolase69-346 aa

PF08282Hydrolase_383-117 aa

PF13246Cation_ATPase117-237 aa

PF08282Hydrolase_3328-366 aa

PF13246Cation_ATPase666-680 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G034520	`PF00702`	Hydrolase	69	346	1.3e-15	59.1
TkA08G034520	`PF08282`	Hydrolase_3	83	117	0.00014	22.4
TkA08G034520	`PF13246`	Cation_ATPase	117	237	8.7e-08	32.9
TkA08G034520	`PF08282`	Hydrolase_3	328	366	0.00014	22.4
TkA08G034520	`PF13246`	Cation_ATPase	666	680	8.7e-08	32.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P19456`	Arabidopsis thaliana	sp\|P19456\|PMA2_ARATH ATPase 2, plasma membrane-type	86.000%	Swiss-Prot	High
`Q9SJB3`	Arabidopsis thaliana	sp\|Q9SJB3\|PMA5_ARATH ATPase 5, plasma membrane-type	84.300%	Swiss-Prot	High
`Q7XPY2`	Oryza sativa subsp. japonica	sp\|Q7XPY2\|PMA1_ORYSJ Plasma membrane ATPase	87.700%	Swiss-Prot	High

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