RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G012130
Reference: TK1151 Chr: Chr08 Coordinates: 2967531-2968378 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

441 bp · TkA08G012130|TK1151|cDNA

AAAACAGGAGCCGAATTGCACCTACAACAACAACATCAACATATCTCCTTCTCCCATTCCGAGCAAAGGGAGACGACTGAAGTGGAAGTGAAAGATACAAACGATGCGAGAAAAGTTCAGAAGGCCGACCGTGAAAAACTGAGAAGAGATAGATTGAACGAGCAATTCATCGAGTTGGGACATATACTCGACAGACCTAAAAACGACAAAGCCAGTATCATAATCGACACCATTCAAGTCCTGAAGGATCTGACAACCGA...

CDS

Download CDS FASTA

441 bp · TkA08G012130|TK1151|CDS

AAAACAGGAGCCGAATTGCACCTACAACAACAACATCAACATATCTCCTTCTCCCATTCCGAGCAAAGGGAGACGACTGAAGTGGAAGTGAAAGATACAAACGATGCGAGAAAAGTTCAGAAGGCCGACCGTGAAAAACTGAGAAGAGATAGATTGAACGAGCAATTCATCGAGTTGGGACATATACTCGACAGACCTAAAAACGACAAAGCCAGTATCATAATCGACACCATTCAAGTCCTGAAGGATCTGACAACCGA...

Protein

Download Protein FASTA

147 aa · TkA08G012130|TK1151|PROTEIN

KTGAELHLQQQHQHISFSHSEQRETTEVEVKDTNDARKVQKADREKLRRDRLNEQFIELGHILDRPKNDKASIIIDTIQVLKDLTTEVTRLKSECAALSEESSELTQEKNELREEKSSLKSDIENLNTQYQQRVGVMYPWGTIDHPS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G012130
TK1151 IDTkA08G012130
OH-1004 IDLXL04_007269
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)96.800
Protein coverage (%)TK1151 84.354 / OH-1004 34.711
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G012130
LocationChr08:2967531-2968378 (-)
DescriptionSimilar to BHLH121: Transcription factor bHLH121
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g19860 Transcription factor bHLH121. No verified direct reference in this release
At4g36060 Transcription factor bHLH11. No verified direct reference in this release
At5g54680 Transcription factor.
An Arabidopsis basic helix-loop-helix leucine zipper protein modulates metal homeostasis and auxin conjugate responsiveness.2006 · DOI: 10.1534/genetics.106.061044

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0628500 Transcription factor that plays a positive role in salt stress tolerance.
OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.2015 · DOI: 10.1016/j.plantsci.2014.12.010
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007269 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006879 intracellular iron ion homeostasis Biological Process
GO:0010039 response to iron ion Biological Process
GO:0019760 glucosinolate metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0046983 protein dimerization activity Molecular Function
GO:1990837 sequence-specific double-stranded DNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G19860
ath:AT4G36060
ath:AT5G54680
dosa:Os03g0379300
dosa:Os07g0628500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.935
Rank 1 · TkA08G012130 · TK1151
Cytoplasm0.243
Rank 2 · TkA08G012130 · TK1151
Cell membrane0.018
Rank 3 · TkA08G012130 · TK1151
Mitochondrion0.017
Rank 4 · TkA08G012130 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA08G012130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30381CEP135_N5-130 aa
PF25994HH_AprE5-37 aa
PF24319DUF74917-45 aa
PF06657Cep57_MT_bd7-27 aa
PF07889DUF16647-32 aa
PF28219Spindly8-132 aa
PF28726CCDC1108-52 aa
PF27821CEP162_helical_38-63 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G012130PF30381CEP135_N51300.005416.4
TkA08G012130PF25994HH_AprE5370.009416.8
TkA08G012130PF24319DUF74917450.0005720.8
TkA08G012130PF06657Cep57_MT_bd7271.89.7
TkA08G012130PF07889DUF16647322.68.8
TkA08G012130PF28219Spindly81320.2111.2
TkA08G012130PF28726CCDC1108521.18.7
TkA08G012130PF27821CEP162_helical_38631.210.1
TkA08G012130PF04871Uso1_p115_C8462.19.3
TkA08G012130PF06156YabA9470.008917.3
TkA08G012130PF28159CEP8991271.77.7
TkA08G012130PF16043DUF479510490.02714.6
TkA08G012130PF30919CRWN_second_CC11520.005217.0
TkA08G012130PF24824PH_SPT1611571.69.4
TkA08G012130PF30907IPGA1_CC12330.01516.3
TkA08G012130PF10786HI_055212840.1512.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LT23Arabidopsis thalianasp|Q9LT23|BH121_ARATH Transcription factor bHLH12169.700%Swiss-ProtHigh
Q8W2F2Arabidopsis thalianasp|Q8W2F2|BH011_ARATH Transcription factor bHLH1167.000%Swiss-ProtMedium
Q9FH37Arabidopsis thalianasp|Q9FH37|ILR3_ARATH Transcription factor ILR350.900%Swiss-ProtLow
Q69V10Oryza sativa subsp. japonicasp|Q69V10|BH062_ORYSJ Transcription factor BHLH06243.100%Swiss-ProtLow

JBrowse

View in Genome Browser