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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G424090
Reference: TK1151 Chr: Chr07 Coordinates: 107277285-107277659 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

375 bp · TkA07G424090|TK1151|cDNA

ATGGTGCTAGAAATCGTGACTTCTTTGGTGTTATTGTTTGTGGGTATTGCTGTTTTGGTGATAATTCATGTATGTTTAGCTGGAAGAAGATCATGGATGACTCAAGGAAGCAATGGGAGTAGTAATGAGGTGCGAAATAGTAGTACCATTTCAGAAGGTCATATAAAGAATCTTCCATGGTATGATTATCAAGAAGATAAAGTTGGAAAAGAAGTTGAGTGTGTTGTATGTTTGGAGGGTTTTAAGGGTGGTGATAAATG...

CDS

Download CDS FASTA

375 bp · TkA07G424090|TK1151|CDS

ATGGTGCTAGAAATCGTGACTTCTTTGGTGTTATTGTTTGTGGGTATTGCTGTTTTGGTGATAATTCATGTATGTTTAGCTGGAAGAAGATCATGGATGACTCAAGGAAGCAATGGGAGTAGTAATGAGGTGCGAAATAGTAGTACCATTTCAGAAGGTCATATAAAGAATCTTCCATGGTATGATTATCAAGAAGATAAAGTTGGAAAAGAAGTTGAGTGTGTTGTATGTTTGGAGGGTTTTAAGGGTGGTGATAAATG...

Protein

Download Protein FASTA

124 aa · TkA07G424090|TK1151|PROTEIN

MVLEIVTSLVLLFVGIAVLVIIHVCLAGRRSWMTQGSNGSSNEVRNSSTISEGHIKNLPWYDYQEDKVGKEVECVVCLEGFKGGDKCRLLPRCRHSFHVNCIDSWLMKTAVCPVCRTCVDFGGS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G424090
TK1151 IDTkA07G424090
OH-1004 IDLXL04_030701
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.100
Protein coverage (%)TK1151 92.742 / OH-1004 31.856
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G424090
LocationChr07:107277285-107277659 (-)
DescriptionSimilar to RABA5C: Ras-related protein RABA5c
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g72310 RING-H2 finger protein ATL3. No verified direct reference in this release
At2g20030 Putative RING-H2 finger protein ATL12. No verified direct reference in this release
At4g28890 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. No verified direct reference in this release
At1g53820 RING-H2 finger protein ATL60. No verified direct reference in this release
At5g01880 RING-H2 finger protein ATL74. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030701 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0009408 response to heat Biological Process
GO:0048219 inter-Golgi cisterna vesicle-mediated transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005795 Golgi stack Cellular Component
GO:0005798 Golgi-associated vesicle Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G05810
ath:AT2G31680
ath:AT2G43130
ath:AT3G07410
ath:AT5G47520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.309
Rank 1 · TkA07G424090 · TK1151
Lysosome / Vacuole0.253
Rank 2 · TkA07G424090 · TK1151
Cell membrane0.233
Rank 3 · TkA07G424090 · TK1151
Golgi apparatus0.214
Rank 4 · TkA07G424090 · TK1151
Cytoplasm0.213
Rank 5 · TkA07G424090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03954Lectin_N7-58 aa
PF13445zf-RING_UBOX25-38 aa
PF17120zf-RING_1629-35 aa
PF13771zf-HC5HC2H59-104 aa
PF15227zf-C3HC4_464-77 aa
PF13920zf-C3HC4_371-119 aa
PF14446Prok-RING_171-102 aa
PF11793FANCL_C71-108 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G424090PF03954Lectin_N7580.0913.4
TkA07G424090PF13445zf-RING_UBOX25385.3e-0523.8
TkA07G424090PF17120zf-RING_1629350.5110.7
TkA07G424090PF13771zf-HC5HC2H591040.06514.1
TkA07G424090PF15227zf-C3HC4_464770.7910.6
TkA07G424090PF13920zf-C3HC4_3711190.002918.1
TkA07G424090PF14446Prok-RING_1711020.01416.2
TkA07G424090PF11793FANCL_C711082.99.0
TkA07G424090PF23413zf_RING_Vps8_fungal72770.3610.9
TkA07G424090PF13639zf-RING_2731161.8e-1351.3
TkA07G424090PF17123zf-RING_11731022.8e-1040.4
TkA07G424090PF13923zf-C3HC4_2731151.7e-0628.4
TkA07G424090PF14634zf-RING_5731172.7e-0524.8
TkA07G424090PF17120zf-RING_16731140.5110.7
TkA07G424090PF21202SLX1_C731181.410.0
TkA07G424090PF00097zf-C3HC4741159.1e-0729.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XF63Arabidopsis thalianasp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL344.600%Swiss-ProtMedium
Q9SL78Arabidopsis thalianasp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL1246.300%Swiss-ProtMedium
Q5XF85Arabidopsis thalianasp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL4246.000%Swiss-ProtMedium
P0C035Arabidopsis thalianasp|P0C035|ATL60_ARATH RING-H2 finger protein ATL6054.200%Swiss-ProtLow
Q9LZV8Arabidopsis thalianasp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL7435.800%Swiss-ProtMedium

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