TkA07G372490 | RubberDandelionOmics

Gene overview

TkA07G372490

Reference: TK1151 Chr: Chr07 Coordinates: 93421892-93427449 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4112 bp · TkA07G372490|TK1151|cDNA

TTATAGGGCGAGAGGAAAATATCATAGCCACGTAAGCAAGCATTAGATTTTTTAAGTCCACACACGTTCCAGCTAAAGATCTCTTCTCTCTAAAACGACTATTCTCGCTCTACAAAACTAAACCCCCATCTCTCTCTCTCTTCACCCAAAATTCTCCCCAATTTCGATCCCTTAATCTCTTCTCGTTCCACTAAAATTTTCGAATCATCTTCCTAAATCTCCACGGCGGCTCCAATTCTGTGAAAGATCTACGGAGGAGC...

CDS

Download CDS FASTA

3336 bp · TkA07G372490|TK1151|CDS

ATGGCTGCCACATCATCTGCAAGGTGGACCGATGGTCTCCGATTCTCATCGTTGTTTTGGCCTCCCCCTCTAGATACACATCAGCGCAAGGCACAAATTACCGCATATGTCGACTACTTTGGTAAATTTACATCAGAGCAATTTCCTGAAGATATAGCCGAGCTGGTTCGCCACCGCTACCCCTCACAGGAAAAACGCTTGTTCGATGATGTCTTAGCAACATTTGTCCTCCATCATCCAGAACACGGGCACAATGTCAT...

Protein

Download Protein FASTA

1111 aa · TkA07G372490|TK1151|PROTEIN

MAATSSARWTDGLRFSSLFWPPPLDTHQRKAQITAYVDYFGKFTSEQFPEDIAELVRHRYPSQEKRLFDDVLATFVLHHPEHGHNVILPIISCIIDGTIEYNKSTPPFASFISLVCPTNDNEYSEQWALACGEILRILTHYNRPIFKAEHDRKRSGSQASTSNSDTGKTETGTGTERTTQNEVKPLRPLSPWITDILLAAPLGIRSDYFRWCGGVMGKYAGGELKPPSVMAATSRGSGKHPQLIPSTPRWAVANGAGVIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G372490`
TK1151 ID	TkA07G372490
OH-1004 ID	LXL04_030037
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G372490

Location Chr07:93421892-93427449 (+)

Description Similar to GI: Protein GIGANTEA

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22770`	Involved in regulation of circadian rhythm and photoperiodic flowering.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0182600`	Involved in regulation of circadian rhythm, and in the control of the photoperiodic flowering.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030037 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006950 response to stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009409 response to cold Biological Process

GO:0009585 red, far-red light phototransduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009908 flower development Biological Process

GO:0010218 response to far red light Biological Process

GO:0010378 temperature compensation of the circadian clock Biological Process

GO:0030154 cell differentiation Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0042752 regulation of circadian rhythm Biological Process

KEGG gene cross-reference

ath:AT1G22770

dosa:Os01g0182600

osa:4325329

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.456

Rank 1 · TkA07G372490 · TK1151

Cytoplasm0.431

Rank 2 · TkA07G372490 · TK1151

Cell membrane0.082

Rank 3 · TkA07G372490 · TK1151

Golgi apparatus0.080

Rank 4 · TkA07G372490 · TK1151

Endoplasmic reticulum0.072

Rank 5 · TkA07G372490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30924GIGANTEA_N5-408 aa

PF30921GIGANTEA_M465-774 aa

PF20972MASE9526-592 aa

PF28518GIGANTEA_C713-746 aa

PF20972MASE9744-760 aa

PF28518GIGANTEA_C824-1108 aa

PF20497SWI-SNF_Ssr4_C909-940 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G372490	`PF30924`	GIGANTEA_N	5	408	5.2e-237	787.0
TkA07G372490	`PF30921`	GIGANTEA_M	465	774	6.8e-159	529.4
TkA07G372490	`PF20972`	MASE9	526	592	0.046	14.4
TkA07G372490	`PF28518`	GIGANTEA_C	713	746	7.5e-148	492.1
TkA07G372490	`PF20972`	MASE9	744	760	0.046	14.4
TkA07G372490	`PF28518`	GIGANTEA_C	824	1108	7.5e-148	492.1
TkA07G372490	`PF20497`	SWI-SNF_Ssr4_C	909	940	0.38	10.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SQI2`	Arabidopsis thaliana	sp\|Q9SQI2\|GIGAN_ARATH Protein GIGANTEA	69.700%	Swiss-Prot	High
`Q9AWL7`	Oryza sativa subsp. japonica	sp\|Q9AWL7\|GIGAN_ORYSJ Protein GIGANTEA	67.500%	Swiss-Prot	High

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