TkA07G355060 | RubberDandelionOmics

Gene overview

TkA07G355060

Reference: TK1151 Chr: Chr07 Coordinates: 88839963-88842323 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1696 bp · TkA07G355060|TK1151|cDNA

GGGATGTCCAGCAGTGGGGTTTGTTTGGCATCCATGTGAAGCTTCCTTTGAATTCCTAAATTGTCTAGTCAAATTTTCTTCTTTTCGGAGGTTTCTTGTGAAACCATTTCACTCCCATTCACATCATCAACCACCTGTTTGTTCATAATAAACACAAAAAAGCCACATAATCCCATGATATTCCCACCCTGGCTTTGTTTCATTTCCAATTTTCTCCTTGAGTTCTCCCCAATTTCATCCCTATTTGCTCACTTCATCTT...

CDS

Download CDS FASTA

1149 bp · TkA07G355060|TK1151|CDS

ATGATGAAATGTTTCAGTATTTTCAGTTCCAGAACGAAGAGAAGAGGAAAATCTTCACCGGAGCTCCGGGAGCAAAACCCATCAACAAAACCATCCACAAGATTAGTAAAGTCGACAGGATCAATCGTTTCACCAAGAACCATACCGGAATTGTACAGAGAAAAAGGACATAATTTGACCAAGTTTTCGTTTTCAGTGCTCAGAAATGCTACTAATAACTTCAATAGATCGTTAAAAATCGGAGAAGGTGGATTCGGGAG...

Protein

Download Protein FASTA

382 aa · TkA07G355060|TK1151|PROTEIN

MMKCFSIFSSRTKRRGKSSPELREQNPSTKPSTRLVKSTGSIVSPRTIPELYREKGHNLTKFSFSVLRNATNNFNRSLKIGEGGFGSVYKGSIKPPGGQGEPLVVAIKKLNRNGMQGHKEWLAEVQFLGVVEHPNLVKLLGYCSTDGERGIQRLLVYEYMPNKSLEDHLFSRAFPPIPWKRRLQILHGAAQGLAYLHEGLEIQVIFRDFKSSNVLLDENFNPKLSDFGLAREGPQGDQSHVSTMPVGTYGYAAPEYVETG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G355060`
TK1151 ID	TkA07G355060
OH-1004 ID	LXL04_029869
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G355060

Location Chr07:88839963-88842323 (+)

Description Similar to PBL19: Probable serine/threonine-protein kinase PBL19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47070`	May be involved in plant defense signaling.	No verified direct reference in this release
`At4g17660`	May be involved in plant defense signaling.	No verified direct reference in this release
`At3g09830`	Involved in the activation of early immune responses.	The receptor-like cytoplasmic kinase PCRK1 contributes to pattern-triggered immunity against Pseudomonas syringae in Arabidopsis thaliana.2015 · DOI: 10.1111/nph.13345 Functional characterization of PCRK1, a putative protein kinase with a role in immunity.2015 · DOI: 10.1080/15592324.2015.1063759
`At5g03320`	Functions redundantly with PCRK1 in basal resistance against bacterial pathogens and in regulation of plant immunity.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0110900`	Functions downstream of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity.	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.2014 · DOI: 10.1111/tpj.12710

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029869 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002221 pattern recognition receptor signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0009617 response to bacterium Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0080142 regulation of salicylic acid biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G09830

ath:AT4G17660

ath:AT5G03320

ath:AT5G47070

dosa:Os05g0110900

osa:4337593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.674

Rank 1 · TkA07G355060 · TK1151

Cytoplasm0.264

Rank 2 · TkA07G355060 · TK1151

Nucleus0.239

Rank 3 · TkA07G355060 · TK1151

Endoplasmic reticulum0.039

Rank 4 · TkA07G355060 · TK1151

Golgi apparatus0.027

Rank 5 · TkA07G355060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase76-353 aa

PF07714PK_Tyr_Ser-Thr78-355 aa

PF01636APH119-167 aa

PF01636APH194-233 aa

PF14531Kinase-like202-287 aa

PF01636APH303-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G355060	`PF00069`	Pkinase	76	353	4.5e-45	154.8
TkA07G355060	`PF07714`	PK_Tyr_Ser-Thr	78	355	6.5e-47	160.7
TkA07G355060	`PF01636`	APH	119	167	0.013	15.9
TkA07G355060	`PF01636`	APH	194	233	0.013	15.9
TkA07G355060	`PF14531`	Kinase-like	202	287	0.076	13.0
TkA07G355060	`PF01636`	APH	303	380	0.013	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LTC0`	Arabidopsis thaliana	sp\|Q9LTC0\|PBL19_ARATH Probable serine/threonine-protein kinase PBL19	57.700%	Swiss-Prot	High
`F4JPX3`	Arabidopsis thaliana	sp\|F4JPX3\|PBL20_ARATH Probable serine/threonine-protein kinase PBL20	59.900%	Swiss-Prot	High
`Q9SF86`	Arabidopsis thaliana	sp\|Q9SF86\|PCRK1_ARATH Serine/threonine-protein kinase PCRK1	53.600%	Swiss-Prot	High
`Q9LZF8`	Arabidopsis thaliana	sp\|Q9LZF8\|PCRK2_ARATH Serine/threonine-protein kinase PCRK2	54.900%	Swiss-Prot	High
`Q65XV8`	Oryza sativa subsp. japonica	sp\|Q65XV8\|RK176_ORYSJ Receptor-like cytoplasmic kinase 176	50.900%	Swiss-Prot	High

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