RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G325950
Reference: TK1151 Chr: Chr07 Coordinates: 81596496-81601735 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2869 bp · TkA07G325950|TK1151|cDNA

ACTGCCACCGTCATTTCCATTCTACGGCCGCTTGCCGCCGGTAAGAAGCACCACTTTCTCCGCCGTTCTTTCAGGAAATCCTCTCATTTTCTTAGATACTTTTTGGTTACTAAAGAAATTTTGGCATTTGGAATCATTTGGATCGTAAGCTATTTGTTCGTTTCTTCTTAAACATTCCTCAATTCATCTGTTTGATGTATGAGAAGCTAATTACGCATTATTGTCTTCAACTGTGACGAATTTGTTTGGAAAAGAGAGAT...

CDS

Download CDS FASTA

2400 bp · TkA07G325950|TK1151|CDS

ATGGATCAAGGAGGACGTGCGTTTGTGTCGGCGTTGAGTGTGGGAATAGGAATAGGCGTTGGGCTTGGGGTGGGGAGGACGGTGAATCGTTTGGCCGCCGGCAATGATTCTTCAACAAACCCTGTCACGCCACAAATAATGGAGCGTGAGATGCTTGGTTTGATCATGGATGGCAGAGATAGCAAGGTTACTTTCTATGAATTTCCGTATTACCTCAGTGAGCAGACAAGGGTCTTACTTACAAGTGCTGCATGTTTTTA...

Protein

Download Protein FASTA

799 aa · TkA07G325950|TK1151|PROTEIN

MDQGGRAFVSALSVGIGIGVGLGVGRTVNRLAAGNDSSTNPVTPQIMEREMLGLIMDGRDSKVTFYEFPYYLSEQTRVLLTSAACFYLKNIDFSRHTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDVTDFSLKLQNKYGASAKPNSLKRSISETTLARMSGLFEGLSMIQPKPERKGGLRRQSSVADLGSNQPLQNPPNLRRNASTAANLDQFASNPVNPAPQSNWSFDEKLFVQTLYKVLTFTSNNSPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G325950
TK1151 IDTkA07G325950
OH-1004 IDLXL04_029581
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.900
Protein coverage (%)TK1151 100.000 / OH-1004 89.294
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G325950
LocationChr07:81596496-81601735 (+)
DescriptionSimilar to atad1a: ATPase family AAA domain-containing protein 1-A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029581 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001578 microtubule bundle formation Biological Process
GO:0002092 positive regulation of receptor internalization Biological Process
GO:0006626 protein targeting to mitochondrion Biological Process
GO:0007019 microtubule depolymerization Biological Process
GO:0009653 anatomical structure morphogenesis Biological Process
GO:0031117 positive regulation of microtubule depolymerization Biological Process
GO:0034214 protein hexamerization Biological Process
GO:0045047 protein targeting to ER Biological Process
GO:0051013 microtubule severing Biological Process
GO:0051647 nucleus localization Biological Process
GO:0090258 negative regulation of mitochondrial fission Biological Process
GO:0140570 extraction of mislocalized protein from mitochondrial outer membrane Biological Process
KEGG gene cross-reference
cel:CELE_C24B5.2
mmu:67979
sce:YGR028W
spo:2539116
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.419
Rank 1 · TkA07G325950 · TK1151
Mitochondrion0.204
Rank 2 · TkA07G325950 · TK1151
Nucleus0.185
Rank 3 · TkA07G325950 · TK1151
Peroxisome0.178
Rank 4 · TkA07G325950 · TK1151
Cell membrane0.077
Rank 5 · TkA07G325950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20720nSTAND3103-131 aa
PF00625Guanylate_kin104-129 aa
PF05496RuvB_N105-131 aa
PF01057Parvo_NS1105-128 aa
PF07724AAA_2106-140 aa
PF00004AAA107-141 aa
PF13191AAA_16230-270 aa
PF00005ABC_tran272-319 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G325950PF20720nSTAND31031310.001518.9
TkA07G325950PF00625Guanylate_kin1041290.0514.0
TkA07G325950PF05496RuvB_N1051311.4e-0525.6
TkA07G325950PF01057Parvo_NS11051280.0001221.9
TkA07G325950PF07724AAA_21061400.02215.5
TkA07G325950PF00004AAA1071418.8e-42143.4
TkA07G325950PF13191AAA_162302700.0002422.4
TkA07G325950PF00005ABC_tran2723190.01416.7
TkA07G325950PF24933DUF77513644234.6e-29101.3
TkA07G325950PF13481AAA_255125480.007816.6
TkA07G325950PF12775AAA_75225640.03314.4
TkA07G325950PF02367TsaE5235540.09813.3
TkA07G325950PF20720nSTAND35245580.001518.9
TkA07G325950PF05673DUF8155255650.1611.8
TkA07G325950PF25199nSTAND_NTPase55276010.1212.9
TkA07G325950PF13401AAA_225286110.0001422.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser