Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2243 bp · TkA07G292990|TK1151|cDNA
TTTGCAATTAAAAAAAACAACAAATGACAGCAATGGTAAATGACGCAAAGCCCCACGTCAATACAAGTCTTGGTACAATCAGTCGTTTGGATTTGAATCCCGGGTTCTGCGATTGCACGGCGGTCTATCCTTCCATCTCCGCCCTCTATCTTCCAACCCCAACACTTCCGATTTCCACATCACAATGGGGACATGCACTTTATCCATCCGTCTACATGTTATTAATTTTAGGGAAAATGGAAGTGCCATCAATCTTTCCT...
990 bp · TkA07G292990|TK1151|CDS
ATGTTTCATGCCAAGGTCTCATGTACCACCACACATGATTCTGATTCTGACACTGATAACAACAGTGATATAAGTTCTATCCATGAATTACATAGAGATCCTAACAACAATGGAAGCCTATTTTCTCCAAGAAATGGTCATAATAACAGACGAATGGAACCCCGAGAGCCTGTTGAACAAACTGTCAGGTTTAGTAGAACTTTAAGTGTTGGAAGACTTCGTGATAGAGTTGTTCATAATCATAGACCAATACCATCTTT...
Protein
Download Protein FASTA329 aa · TkA07G292990|TK1151|PROTEIN
MFHAKVSCTTTHDSDSDTDNNSDISSIHELHRDPNNNGSLFSPRNGHNNRRMEPREPVEQTVRFSRTLSVGRLRDRVVHNHRPIPSFPFQPEREEVASEVLETSRHTSSTISNSLFGNQDFEADDNIASRETRYSNLLEHRSNFLERRRRIRSQVHALQRMGNRFENLSGHERSCILSGEYQSGHCSCRVNNQDQNDGNSTRGSISRIVLLAEALFEVLDEIHQQSVVSSSSRPALSSIGSVPAPIEAVEALPVKIYQKL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G292990 |
|---|---|
| TK1151 ID | TkA07G292990 |
| OH-1004 ID | LXL04_029260 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 98.100 |
| Protein coverage (%) | TK1151 96.657 / OH-1004 63.095Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G292990 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:73479981-73482934 (+) | |||||||||
| Description | Similar to rnf149: E3 ubiquitin-protein ligase RNF149 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000578 embryonic axis specification Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0016567 protein ubiquitination Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0016020 membrane Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0042802 identical protein binding Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function GO:0140297 DNA-binding transcription factor binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G19950 ath:AT4G11680 xla:100137618 xla:431819 xtr:548845 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF26148VPS18_RING_C61-79 aaPF13445zf-RING_UBOX173-186 aaPF13920zf-C3HC4_3268-318 aaPF26148VPS18_RING_C268-301 aaPF12678zf-rbx1269-313 aaPF13639zf-RING_2270-313 aaPF17123zf-RING_11270-298 aaPF13923zf-C3HC4_2270-312 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G292990 | PF26148 | VPS18_RING_C | 61 | 79 | 0.13 | 13.1 |
| TkA07G292990 | PF13445 | zf-RING_UBOX | 173 | 186 | 0.0019 | 18.9 |
| TkA07G292990 | PF13920 | zf-C3HC4_3 | 268 | 318 | 0.0075 | 16.8 |
| TkA07G292990 | PF26148 | VPS18_RING_C | 268 | 301 | 0.13 | 13.1 |
| TkA07G292990 | PF12678 | zf-rbx1 | 269 | 313 | 1e-08 | 36.0 |
| TkA07G292990 | PF13639 | zf-RING_2 | 270 | 313 | 1.4e-13 | 51.5 |
| TkA07G292990 | PF17123 | zf-RING_11 | 270 | 298 | 1.6e-09 | 38.0 |
| TkA07G292990 | PF13923 | zf-C3HC4_2 | 270 | 312 | 2e-07 | 31.4 |
| TkA07G292990 | PF14634 | zf-RING_5 | 270 | 313 | 0.00021 | 21.9 |
| TkA07G292990 | PF00097 | zf-C3HC4 | 271 | 312 | 5.2e-09 | 36.5 |
| TkA07G292990 | PF13445 | zf-RING_UBOX | 271 | 310 | 0.0019 | 18.9 |
| TkA07G292990 | PF14570 | zf-RING_4 | 271 | 313 | 0.016 | 15.7 |
| TkA07G292990 | PF11793 | FANCL_C | 271 | 306 | 0.66 | 11.0 |
| TkA07G292990 | PF24921 | RING_XB3-XBAT31 | 271 | 317 | 1.0 | 10.2 |
| TkA07G292990 | PF12861 | zf-ANAPC11 | 281 | 314 | 0.002 | 18.8 |
| TkA07G292990 | PF15227 | zf-C3HC4_4 | 287 | 312 | 0.77 | 10.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.