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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G053510
Reference: TK1151 Chr: Chr07 Coordinates: 14294849-14296857 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

723 bp · TkA07G053510|TK1151|cDNA

CTGCGTCCGACTGACGACCGACTAGAGACCGCCGCTTCTCTCACAGGCGCAACCACCGGCAAGTTCGATTTCAGACTAGAGACCGCCGCTACTCGATTTCAGATTACTCAAGTGTATGGATTTTATGATGAATGTCTTCGGAAGTATGGAAATGCTAATGTTTGGAAAACATTCACCGATCTTTTCGATTATTTCCCACTGACTGCATTGATCCCAGAACTGTATGGCCAGTCAAATTCTCCTCAGTTGGAATGCATTGC...

CDS

Download CDS FASTA

723 bp · TkA07G053510|TK1151|CDS

CTGCGTCCGACTGACGACCGACTAGAGACCGCCGCTTCTCTCACAGGCGCAACCACCGGCAAGTTCGATTTCAGACTAGAGACCGCCGCTACTCGATTTCAGATTACTCAAGTGTATGGATTTTATGATGAATGTCTTCGGAAGTATGGAAATGCTAATGTTTGGAAAACATTCACCGATCTTTTCGATTATTTCCCACTGACTGCATTGATCCCAGAACTGTATGGCCAGTCAAATTCTCCTCAGTTGGAATGCATTGC...

Protein

Download Protein FASTA

240 aa · TkA07G053510|TK1151|PROTEIN

LRPTDDRLETAASLTGATTGKFDFRLETAATRFQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALIPELYGQSNSPQLECIASLDSHSSKIKCVLWWPSGRHDKLISIDEQNIFLWSLDSSTSESSIQFWDLRIMKKTNSIECSHVRNIDYDSKKKHMLVTAADESGIHIWDVRMSKAPVAELPGHSHWTWAVRSNPEYEGIILSAGTDSPVIPLAATAFIISGDICRRYCYDFL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G053510
TK1151 IDTkA07G053510
OH-1004 IDLXL04_015184
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)80.000
Protein coverage (%)TK1151 61.250 / OH-1004 52.023
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G053510
LocationChr07:14294849-14296857 (-)
DescriptionSimilar to DWA2: WD repeat-containing protein DWA2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g76260 Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin- protein ligase complex that acts as a negative regulator in abscisic acid (ABA) signaling.
DWA1 and DWA2, two Arabidopsis DWD protein components of CUL4-based E3 ligases, act together as negative regulators in ABA signal transduction.2010 · DOI: 10.1105/tpc.109.073783

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XN40 Serine/threonine-protein phosphatase PP2A-2 catalytic subunit. No verified direct reference in this release
Os03g0805300 Serine/threonine-protein phosphatase PP2A-2 catalytic subunit. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015184 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0032456 endocytic recycling Biological Process
GO:0051049 regulation of transport Biological Process
GO:1905281 positive regulation of retrograde transport, endosome to Golgi Biological Process
GO:2001137 positive regulation of endocytic recycling Biological Process
GO:0000938 GARP complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005794 Golgi apparatus Cellular Component
KEGG gene cross-reference
ath:AT1G76260
gja:107122311
rno:362721
xtr:496745
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.449
Rank 1 · TkA07G053510 · TK1151
Nucleus0.431
Rank 2 · TkA07G053510 · TK1151
Cell membrane0.072
Rank 3 · TkA07G053510 · TK1151
Mitochondrion0.066
Rank 4 · TkA07G053510 · TK1151
Endoplasmic reticulum0.063
Rank 5 · TkA07G053510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00149Metallophos41-111 aa
PF23609Beta-prop_EIPR176-126 aa
PF24797Beta-prop_WDR35_TULP_N76-125 aa
PF24105Beta-prop_CAF1B_HIR177-205 aa
PF25047Beta-prop_TEP1_2nd79-198 aa
PF23383Beta-prop_IFT140_1st80-126 aa
PF23381Beta-prop_IFT122_1st82-128 aa
PF25172Beta-prop_WDR3_2nd82-182 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G053510PF00149Metallophos411110.001120.1
TkA07G053510PF23609Beta-prop_EIPR1761265.3e-41141.6
TkA07G053510PF24797Beta-prop_WDR35_TULP_N761250.06213.2
TkA07G053510PF24105Beta-prop_CAF1B_HIR1772050.0002321.0
TkA07G053510PF25047Beta-prop_TEP1_2nd791980.005616.6
TkA07G053510PF23383Beta-prop_IFT140_1st801260.0313.8
TkA07G053510PF23381Beta-prop_IFT122_1st821286.7e-0729.6
TkA07G053510PF25172Beta-prop_WDR3_2nd821820.001618.5
TkA07G053510PF24782WD40_MABP1-WDR62_2nd831128.6e-0522.4
TkA07G053510PF24814WD40_Prp19841246.4e-0729.4
TkA07G053510PF25173Beta-prop_WDR3_1st842156.4e-0730.0
TkA07G053510PF00400WD40841210.0001223.1
TkA07G053510PF23775Beta-prop_RIG_2nd841290.0004720.4
TkA07G053510PF23414Beta-prop_EML_2881220.04713.8
TkA07G053510PF25174Beta-prop_THOC3931941.2e-0731.7
TkA07G053510PF29037DSE1_N931280.0007419.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6NPN9Arabidopsis thalianasp|Q6NPN9|DWA2_ARATH WD repeat-containing protein DWA256.100%Swiss-ProtMedium
A2XN40Oryza sativa subsp. indicasp|A2XN40|PP2A2_ORYSI Serine/threonine-protein phosphatase PP2A-2 catalytic subunit70.000%Swiss-ProtLow
Q10BT5Oryza sativa subsp. japonicasp|Q10BT5|PP2A2_ORYSJ Serine/threonine-protein phosphatase PP2A-2 catalytic subunit70.000%Swiss-ProtLow

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