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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G006490
Reference: TK1151 Chr: Chr07 Coordinates: 1805728-1809520 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3596 bp · TkA07G006490|TK1151|cDNA

CTTGCATTTAATAACTGCGTAAGGTCTAAAACATCATCTACACACATCCTTCTTTCCATTTATCAAACCTCTTTCTTCCACCATCTCGTTATTGCTTCTCTTTTCTTCCACCATCTATCAAAATGGCCGAAGCCTTAGTCACAATTGCTGCTGAAGGGATACTAGAAAGAGTGTTATCTTTAGCTACTAGCGAAATCGTCCTTGCTTGGGGTTATGAAGAGAAGTTAGCCGACCTTCATAGAACCTTGGAGCTCATTAGT...

CDS

Download CDS FASTA

2979 bp · TkA07G006490|TK1151|CDS

ATGTTGTTGGTGAAGCTAATGATGTGTTGGATGAGATCCATTACGAGAAGACGCGAGGTAAAGAAACGAGACCTCATGGCAAGAAAGGTATCCACTCTCCCAAGTTTTAAAAAGCTTTCATTTCGATTAGAAATGGGTCATAAGATTGAAGATGTTAGCAAAAAGTTGTTTGAGATCAATAAACAAGCAAACGACTTAGGACTACAAAATGAACAACCGGGCGTTTTTCCAAATAGTCTTTTTCGGGAGACTGATCCTTA...

Protein

Download Protein FASTA

992 aa · TkA07G006490|TK1151|PROTEIN

MLLVKLMMCWMRSITRRREVKKRDLMARKVSTLPSFKKLSFRLEMGHKIEDVSKKLFEINKQANDLGLQNEQPGVFPNSLFRETDPYLDEFKVVGRESDELHIVQLLTKSRKEEKLTIVPIVGMGGIGKTTLAKSIYNNSSIEQHFDVKVWLCVSVKVEVVEKLLAKIYESLAGEECKSEMRANLITSLQNKLGSKRYLIVLDDVWDEDGGFWDDFKTCMLKVNSKSGSGILVTTRSLQIGTKSMSEDFHALQSLTDDRC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G006490
TK1151 IDTkA07G006490
OH-1004 IDLXL04_026766
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.500
Protein coverage (%)TK1151 98.387 / OH-1004 91.714
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G006490
LocationChr07:1805728-1809520 (-)
DescriptionSimilar to RGA1: Putative disease resistance protein RGA1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g14470 Potential disease resistance protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026766 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0051607 defense response to virus Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ath:AT3G14470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.568
Rank 1 · TkA07G006490 · TK1151
Cytoplasm0.263
Rank 2 · TkA07G006490 · TK1151
Nucleus0.212
Rank 3 · TkA07G006490 · TK1151
Endoplasmic reticulum0.077
Rank 4 · TkA07G006490 · TK1151
Lysosome / Vacuole0.028
Rank 5 · TkA07G006490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05496RuvB_N88-140 aa
PF13191AAA_1692-205 aa
PF00931NB-ARC106-269 aa
PF25201nSTAND6114-151 aa
PF20720nSTAND3115-141 aa
PF00005ABC_tran117-141 aa
PF13401AAA_22119-205 aa
PF05729NACHT119-204 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G006490PF05496RuvB_N881400.1912.2
TkA07G006490PF13191AAA_16922050.0006920.9
TkA07G006490PF00931NB-ARC1062693.5e-35121.8
TkA07G006490PF25201nSTAND61141510.2512.1
TkA07G006490PF20720nSTAND31151410.2112.0
TkA07G006490PF00005ABC_tran1171410.2612.6
TkA07G006490PF13401AAA_221192050.01616.3
TkA07G006490PF05729NACHT1192040.1912.3
TkA07G006490PF00004AAA1211700.1313.5
TkA07G006490PF23952LRR_EndoS3103440.0007620.4
TkA07G006490PF23559WHD_DRP3564279.1e-2071.2
TkA07G006490PF00931NB-ARC3684003.5e-35121.8
TkA07G006490PF25019LRR_R13L1-DRL213854598.2e-38129.9
TkA07G006490PF23952LRR_EndoS4875390.0007620.4
TkA07G006490PF00004AAA4905270.1313.5
TkA07G006490PF25013LRR_Zer-14975610.0001322.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LRR4Arabidopsis thalianasp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 129.700%Swiss-ProtLow

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