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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G002780
Reference: TK1151 Chr: Chr07 Coordinates: 729992-733107 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1883 bp · TkA07G002780|TK1151|cDNA

CTAAAGGTTGTCTTTCATGGACAAGTATTGGAAACCAGCACAGCTTACTAATTTAAGAGTAGACTTTCTCTCTCCTCCTTCCTTCTTTCTCTCTCTCACACACATACACACCGTCGCCGGTAATTTCATAAACTATCGCCGGTTACACCACTCCGTTCCCGGCTAAGCTAACACTCAGTGGAGTCCAGCTCGCTTACACATGTTCCTCATCTCCTCTTCCTAGCTTCTGTATCTAACGCCTAAATGTCTATATACGATAA...

CDS

Download CDS FASTA

1434 bp · TkA07G002780|TK1151|CDS

ATGTCTATATACGATAAAGCATTCATGAACAGCGAGCTCTCAAAACCTACCTCTATATTCGGTCTCCGGCTATGGGTTGTCGTCGGGATCTTCGTCGGAGTTATCATAGTCCTCGTGCTTTTCCTCATCTCCGTCTGCATCACCTCCCGCCGTCGACACTCTCACTCGAGTAAAAAAAATGAACAAACCCTAACCCCTGCAGTATCGAAAGAAATACAAGAGATAGTCCACCACGAGTCGACTGCAGCTGTGGATCACCG...

Protein

Download Protein FASTA

477 aa · TkA07G002780|TK1151|PROTEIN

MSIYDKAFMNSELSKPTSIFGLRLWVVVGIFVGVIIVLVLFLISVCITSRRRHSHSSKKNEQTLTPAVSKEIQEIVHHESTAAVDHRMSVPEIQIDIGKSEHRVVFSDRQSSGESRATSNDTASYCGGSGGSSLPQVSHLGWGRWYTLRELEAATNGLADENVIGEGGYGIVYSGILGDNTRVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDQWLHGDVGDVSPLSWSIRLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G002780
TK1151 IDTkA07G002780
OH-1004 IDLXL04_026705
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G002780
LocationChr07:729992-733107 (-)
DescriptionSimilar to At1g01540: Probable serine/threonine-protein kinase At1g01540
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g01540 Probable serine/threonine-protein kinase At1g01540. No verified direct reference in this release
At4g34500 Probable receptor-like serine/threonine-protein kinase At4g34500. No verified direct reference in this release
At2g42960 Probable receptor-like protein kinase At2g42960. No verified direct reference in this release
At5g18500 Probable receptor-like protein kinase At5g18500. No verified direct reference in this release
At3g17420 Probable receptor-like protein kinase At3g17420. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026705 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0046777 protein autophosphorylation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009514 glyoxysome Cellular Component
GO:0016020 membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G01540
ath:AT2G42960
ath:AT3G17420
ath:AT4G34500
ath:AT5G18500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.790
Rank 1 · TkA07G002780 · TK1151
Cytoplasm0.157
Rank 2 · TkA07G002780 · TK1151
Nucleus0.133
Rank 3 · TkA07G002780 · TK1151
Endoplasmic reticulum0.048
Rank 4 · TkA07G002780 · TK1151
Golgi apparatus0.026
Rank 5 · TkA07G002780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03896TRAP_alpha3-62 aa
PF06196DUF99714-45 aa
PF16038TMIE19-48 aa
PF28792DUF846119-44 aa
PF27867Membra_charge22-77 aa
PF14851FAM17624-101 aa
PF06143Baculo_11_kDa24-64 aa
PF04478Mid226-52 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G002780PF03896TRAP_alpha3620.2711.1
TkA07G002780PF06196DUF99714450.5610.9
TkA07G002780PF16038TMIE19480.03214.7
TkA07G002780PF28792DUF846119441.79.8
TkA07G002780PF27867Membra_charge22770.1213.1
TkA07G002780PF14851FAM176241010.02515.1
TkA07G002780PF06143Baculo_11_kDa24640.08113.2
TkA07G002780PF04478Mid226520.1412.6
TkA07G002780PF27960NCMAP27640.1113.2
TkA07G002780PF14575EphA2_TM28610.2512.8
TkA07G002780PF15345TMEM51291080.04214.4
TkA07G002780PF07714PK_Tyr_Ser-Thr1614284.6e-46157.9
TkA07G002780PF00069Pkinase1614272.8e-45155.5
TkA07G002780PF03109ABC11671860.04313.7
TkA07G002780PF03109ABC12693140.04313.7
TkA07G002780PF14851FAM1764474710.02515.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3EDL4Arabidopsis thalianasp|Q3EDL4|Y1154_ARATH Probable serine/threonine-protein kinase At1g0154075.300%Swiss-ProtHigh
Q6NKZ9Arabidopsis thalianasp|Q6NKZ9|Y4345_ARATH Probable receptor-like serine/threonine-protein kinase At4g3450057.300%Swiss-ProtHigh
Q9SJG2Arabidopsis thalianasp|Q9SJG2|Y2296_ARATH Probable receptor-like protein kinase At2g4296054.000%Swiss-ProtHigh
Q8LEB6Arabidopsis thalianasp|Q8LEB6|Y5185_ARATH Probable receptor-like protein kinase At5g1850052.600%Swiss-ProtHigh
Q9LRP3Arabidopsis thalianasp|Q9LRP3|Y3174_ARATH Probable receptor-like protein kinase At3g1742063.800%Swiss-ProtMedium

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