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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G061780
Reference: TK1151 Chr: Chr06 Coordinates: 16679865-16685524 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4101 bp · TkA06G061780|TK1151|cDNA

ATAAAACCATGTTATATCGTGCTTATTTATTCATTCCACCGGTTTTATTTTGGCTTAAAAAATACCAATGTTATGCGAAGTAGTCTCTCCTACCCTGTATCATCTCACTCTCTCTCACACACAGATACACACACTACCCCATTGATATCGCCTTCTCTCTATATTTCCATTTTTCACACTCCTCTCACTTTGTAGAGCTTCGTAACATCCGACACATGTCTACTCGTAGGGAGAGGTAAAATTAGGGTTAGGGTTTTGAA...

CDS

Download CDS FASTA

2460 bp · TkA06G061780|TK1151|CDS

ATGGAGGTTGAAGATGTAAACGCCTCAAATCATCTTCAAGAATCGACAACAGCCGTATCAAATGAAAGCTTGTCAGAAAATAAAAGCATGAATGATATAGAATTAAAAGTAGAGGTACCGGAATCGAACACACAAGAAGAACAAGGAGAAAAATCGTCTGTTTTATCCCCTAAATTGGACGATCCAAATCATTTTGACCCGGGTGCAGAGGGGGGAACAGCTGAGGAGAAGGAGGTCATTGTCGAATGCCGGAACTCAGA...

Protein

Download Protein FASTA

819 aa · TkA06G061780|TK1151|PROTEIN

MEVEDVNASNHLQESTTAVSNESLSENKSMNDIELKVEVPESNTQEEQGEKSSVLSPKLDDPNHFDPGAEGGTAEEKEVIVECRNSEQTGGCWNSLVVEPTSLLKDEKDRAEDVISTSDVAATERGGSELPNSIKADVGECSAAVSVPDNGLDVVEETVNNREEETNTNVSFVNEDDKDGGAAVPLLPVAEIDEIEEVKEDVKSDGVEFVAGAELITEGEADVQVLAAEVVADEEEKAAGVTENDDEEPTVADEEKSVDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G061780
TK1151 IDTkA06G061780
OH-1004 IDLXL04_025397
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 98.168 / OH-1004 67.280
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G061780
LocationChr06:16679865-16685524 (-)
DescriptionSimilar to NERD: Zinc finger CCCH domain-containing protein 19
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: Q9SIV5 Plays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. No verified direct reference in this release
At3g51120 Zinc finger CCCH domain-containing protein 44. No verified direct reference in this release
At5g08430 Uncharacterized protein At5g08430. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025397 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0032259 methylation Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0080188 gene silencing by siRNA-directed DNA methylation Biological Process
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016593 Cdc73/Paf1 complex Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G16485
ath:AT5G08430
hsa:54904
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.961
Rank 1 · TkA06G061780 · TK1151
Cytoplasm0.104
Rank 2 · TkA06G061780 · TK1151
Cell membrane0.024
Rank 3 · TkA06G061780 · TK1151
Endoplasmic reticulum0.012
Rank 4 · TkA06G061780 · TK1151
Mitochondrion0.009
Rank 5 · TkA06G061780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13771zf-HC5HC2H320-362 aa
PF23011PHD-1st_NSD323-352 aa
PF22908PHD_NSD324-370 aa
PF21255DNMT3_ADD_GATA1-like326-353 aa
PF17982C5HCH369-399 aa
PF22586ANCHR-like_BBOX371-396 aa
PF00643zf-B_box371-396 aa
PF21255DNMT3_ADD_GATA1-like394-419 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G061780PF13771zf-HC5HC2H3203620.0001822.3
TkA06G061780PF23011PHD-1st_NSD3233520.04614.6
TkA06G061780PF22908PHD_NSD3243700.0001223.0
TkA06G061780PF21255DNMT3_ADD_GATA1-like3263537.07.6
TkA06G061780PF17982C5HCH3693990.312.0
TkA06G061780PF22586ANCHR-like_BBOX3713960.01815.8
TkA06G061780PF00643zf-B_box3713960.7710.7
TkA06G061780PF21255DNMT3_ADD_GATA1-like3944197.07.6
TkA06G061780PF00643zf-B_box4054170.7710.7
TkA06G061780PF22586ANCHR-like_BBOX4074160.01815.8
TkA06G061780PF02201SWIB5245976e-1452.3
TkA06G061780PF26291SWIB_eIF2D5415760.003317.8
TkA06G061780PF03126Plus-36577541.4e-1971.3
TkA06G061780PF26291SWIB_eIF2D6656800.003317.8
TkA06G061780PF23011PHD-1st_NSD7307480.04614.6
TkA06G061780PF25980NERD_plant7778032.4e-0627.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SIV5Arabidopsis thalianasp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 1952.000%Swiss-ProtMedium
Q9SD34Arabidopsis thalianasp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 4447.600%Swiss-ProtMedium
Q9FT92Arabidopsis thalianasp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g0843033.000%Swiss-ProtLow

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