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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G048700
Reference: TK1151 Chr: Chr06 Coordinates: 13207654-13209814 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1454 bp · TkA06G048700|TK1151|cDNA

AAACGTTGATAACAAAAGCCCTAGGCATTCAGTGACTGGCGCCATTACGTTCTTTGCTACTCCCGCGCAAAGCAATCACACACCACCGCCATAGACGCCGATAGATCCATTCTCGAGAGTGAAAATGGCCGAAGTGATTTCGCCAATGGACATCGACGACAGTAATCCGTCTCAAGGACCTAACGGGAACAAGGGCAAAGCTGTAGCCTCTTCCGGCGGCGCTCCACCAGCGCACACCAAAGCCACTCCATGGGTCGAGA...

CDS

Download CDS FASTA

1095 bp · TkA06G048700|TK1151|CDS

ATGGCCGAAGTGATTTCGCCAATGGACATCGACGACAGTAATCCGTCTCAAGGACCTAACGGGAACAAGGGCAAAGCTGTAGCCTCTTCCGGCGGCGCTCCACCAGCGCACACCAAAGCCACTCCATGGGTCGAGAAGTTCCGGCCTCAATCTCTAGCCGACGTCGCCGCTCATCGTGACATAATCGATACCATTGATAGGCTTACAAGTGAGAACAAAATGCCTCATCTGTTACTGTATGGACCACCGGGCACCGGAAA...

Protein

Download Protein FASTA

364 aa · TkA06G048700|TK1151|PROTEIN

MAEVISPMDIDDSNPSQGPNGNKGKAVASSGGAPPAHTKATPWVEKFRPQSLADVAAHRDIIDTIDRLTSENKMPHLLLYGPPGTGKTSTILAVARKLFGSQMHNMVLELNASDERGIDVVRQQIQDFASTQSFSFGAKSMVKLVLLDEADAMTKDAQFALRRVIERYTKNTRFALICNNVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVITSEGLDVTEDGLAALVRLSNGDMRKSLNILQSTHMASQQITEEAVYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G048700
TK1151 IDTkA06G048700
OH-1004 IDLXL04_025616
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G048700
LocationChr06:13207654-13209814 (+)
DescriptionSimilar to RFC3: Replication factor C subunit 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g77470 Functions in cell replication and proliferation. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0775200 May be involved in DNA replication and thus regulate cell proliferation. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025616 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000076 DNA replication checkpoint signaling Biological Process
GO:0006260 DNA replication Biological Process
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006272 leading strand elongation Biological Process
GO:0006281 DNA repair Biological Process
GO:0006952 defense response Biological Process
GO:0031348 negative regulation of defense response Biological Process
GO:1900264 positive regulation of DNA-directed DNA polymerase activity Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005663 DNA replication factor C complex Cellular Component
GO:0031389 Rad17 RFC-like complex Cellular Component
KEGG gene cross-reference
ath:AT1G77470
ddi:DDB_G0282235
dosa:Os02g0775200
hsa:5985
mmu:72151
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.907
Rank 1 · TkA06G048700 · TK1151
Cytoplasm0.158
Rank 2 · TkA06G048700 · TK1151
Mitochondrion0.048
Rank 3 · TkA06G048700 · TK1151
Cell membrane0.018
Rank 4 · TkA06G048700 · TK1151
Endoplasmic reticulum0.008
Rank 5 · TkA06G048700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03215Rad1739-110 aa
PF05673DUF81541-103 aa
PF05496RuvB_N48-98 aa
PF01580FtsK_SpoIIIE55-91 aa
PF25199nSTAND_NTPase558-176 aa
PF04851ResIII59-135 aa
PF05621TniB59-93 aa
PF06068TIP4959-104 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G048700PF03215Rad17391103e-0937.8
TkA06G048700PF05673DUF815411030.0003520.5
TkA06G048700PF05496RuvB_N48980.001319.2
TkA06G048700PF01580FtsK_SpoIIIE55910.09912.8
TkA06G048700PF25199nSTAND_NTPase5581760.001818.9
TkA06G048700PF04851ResIII591350.003817.9
TkA06G048700PF05621TniB59930.02215.0
TkA06G048700PF06068TIP49591040.05213.4
TkA06G048700PF13177DNA_pol3_delta2612009.7e-1245.9
TkA06G048700PF01637ATPase_2621879.2e-0523.1
TkA06G048700PF13191AAA_16631173e-0525.3
TkA06G048700PF25201nSTAND6721040.1412.9
TkA06G048700PF00308Bac_DnaA721540.2312.3
TkA06G048700PF13086AAA_11731737.1e-0523.4
TkA06G048700PF13245AAA_19741310.003818.1
TkA06G048700PF12775AAA_7751130.00317.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CAQ8Arabidopsis thalianasp|Q9CAQ8|RFC5_ARATH Replication factor C subunit 575.500%Swiss-ProtHigh
Q6YZ54Oryza sativa subsp. japonicasp|Q6YZ54|RFC3_ORYSJ Replication factor C subunit 378.300%Swiss-ProtHigh

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