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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G047330
Reference: TK1151 Chr: Chr06 Coordinates: 12810214-12817864 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6070 bp · TkA06G047330|TK1151|cDNA

AAATATTGGTGCAAGACTGTAACGTACGCTTTTCCCCTTATCTTCCACCTTTTGTGTACCTTTGTGAGCAGTCAATCTGTTTTCTTGTGTTGCATTCTCGGGTGGCTCTGCACTGCTAACTAAAACCCTCTCCCCTAATTTCCCTTTTCACTTATGAAACCAATGCTTCTTCGTGACTGAGGTGAGAGTCCCACCTTCTCTTCTTCCATGAATTCTACATTCACCTCCCAAATCACCTCCCCTAACCCCTTCACGCCTTT...

CDS

Download CDS FASTA

3888 bp · TkA06G047330|TK1151|CDS

ATGAATTCTACATTCACCTCCCAAATCACCTCCCCTAACCCCTTCACGCCTTTCATCAAGACACCCTCTTTAAACTTCTGTTCATTTCCACAATCACAACATCATAGTCACCGCCGCCGGCGGTGGCGGTCTCAGACACCTTTCACTGTTATCTCCTTACATACTAACAATAAAGCCAATGTTCCCTTACAACTACCCACCAGCGCCGGCATTCATTCCACAGAGCAACGTCAGGATAAGGTACTGCTATCTAATGTAAT...

Protein

Download Protein FASTA

1295 aa · TkA06G047330|TK1151|PROTEIN

MNSTFTSQITSPNPFTPFIKTPSLNFCSFPQSQHHSHRRRRWRSQTPFTVISLHTNNKANVPLQLPTSAGIHSTEQRQDKVLLSNVITRIAKPIAFTVFWIVIGLCPSRGFHQTHAIAAPVTSEALKSTKSKSKQEASNRKDHEFSDYTARLLETVSRLVTIIEEVRSTNGDLKTVEAALNDVKLKKTELQDEIMTRLYADLRVLRGKKTELDRKSGDILNFMVKSKKEKDRILEKRREKTTKDQKLAKLDETVTKKEKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G047330
TK1151 IDTkA06G047330
OH-1004 IDLXL04_025652
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G047330
LocationChr06:12810214-12817864 (+)
DescriptionSimilar to FTSHI5: Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g04340 Required for plastid development during embryogenesis.
FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis.2014 · DOI: 10.1371/journal.pone.0099741
At5g42270 Part of a complex that function as an ATP-dependent zinc metallopeptidase.
The VAR1 locus of Arabidopsis encodes a chloroplastic FtsH and is responsible for leaf variegation in the mutant alleles.2002 · DOI: 10.1046/j.1365-2443.2002.00558.x
Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes.2003 · DOI: 10.1105/tpc.017319

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025652 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010304 PSII associated light-harvesting complex II catabolic process Biological Process
GO:0019684 photosynthesis, light reaction Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0045454 cell redox homeostasis Biological Process
GO:0051301 cell division Biological Process
GO:0080093 regulation of photorespiration Biological Process
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT3G04340
pml:ATP_00273
sfu:Sfum_3197
syn:slr1604
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.922
Rank 1 · TkA06G047330 · TK1151
Mitochondrion0.065
Rank 2 · TkA06G047330 · TK1151
Nucleus0.041
Rank 3 · TkA06G047330 · TK1151
Cytoplasm0.026
Rank 4 · TkA06G047330 · TK1151
Cell membrane0.021
Rank 5 · TkA06G047330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06729CENP-R107-148 aa
PF19585DUF6092150-194 aa
PF06068TIP49169-229 aa
PF06729CENP-R226-296 aa
PF19585DUF6092232-270 aa
PF00005ABC_tran236-289 aa
PF01434Peptidase_M41361-410 aa
PF25199nSTAND_NTPase5370-392 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G047330PF06729CENP-R1071480.04114.5
TkA06G047330PF19585DUF60921501941.110.4
TkA06G047330PF06068TIP491692290.0006119.8
TkA06G047330PF06729CENP-R2262960.04114.5
TkA06G047330PF19585DUF60922322701.110.4
TkA06G047330PF00005ABC_tran2362890.2712.6
TkA06G047330PF01434Peptidase_M413614104.9e-1246.8
TkA06G047330PF25199nSTAND_NTPase53703920.0009719.7
TkA06G047330PF05673DUF8157548280.02614.4
TkA06G047330PF25199nSTAND_NTPase57668770.0009719.7
TkA06G047330PF13191AAA_167828334.7e-0627.9
TkA06G047330PF00158Sigma54_activat7888150.09113.2
TkA06G047330PF06068TIP497908240.0006119.8
TkA06G047330PF00004AAA7949272.2e-31109.7
TkA06G047330PF20720nSTAND37949390.0009619.6
TkA06G047330PF13401AAA_227948260.0315.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4J3N2Arabidopsis thalianasp|F4J3N2|FTSI5_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic61.500%Swiss-ProtHigh
Q9FH02Arabidopsis thalianasp|Q9FH02|FTSH5_ARATH ATP-dependent zinc metalloprotease FTSH 5, chloroplastic29.500%Swiss-ProtLow

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