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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G465210
Reference: TK1151 Chr: Chr05 Coordinates: 116591534-116596094 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2951 bp · TkA05G465210|TK1151|cDNA

AAGATTCCTTTTTCACAAAAATCTACGTTATTAATTAAAAAAATATATCGGGGGTTCAATAATTTGCTGTTGCTAGACTCAACATAGCCTCCAATCATAGGTAGGCGACACCAGAAGGTCAAATGTTTGAGCTCTTTTCATCCGGCGGGAGGGAAGGAAGTAGATGAGTATACGAAATACATTTTCTCTGCTTCTACGGAACTGTTGTCTTAATCCAATAGAAGATTCCCCTTCCTCTTCAATTGCATTTATTATTTGCG...

CDS

Download CDS FASTA

2118 bp · TkA05G465210|TK1151|CDS

ATGGAGCAGCATTTACAAAATCCTGTTTCAGGGCACCCAAAATCTCAAATAACCTCAACAATATTCCAAGAAGTGGAAAGCGAATGGGGGATTCGACACATAATGGATTCATATGAAGCACCAAAGGACATCAGCTTGTTTTCAAGCTCATTGCCTGTCATTCCACATAAAAAATGTGGTAGTGAAGATACACTTGGTGATATCATTAACAGTTTAACCGAAAGCATGCTTCCTGGTGATGAAGATGACCTATTAGCCGG...

Protein

Download Protein FASTA

705 aa · TkA05G465210|TK1151|PROTEIN

MEQHLQNPVSGHPKSQITSTIFQEVESEWGIRHIMDSYEAPKDISLFSSSLPVIPHKKCGSEDTLGDIINSLTESMLPGDEDDLLAGINDDFDLADLPTQLEDLEDDLFESGGGMEMDDGIRFSLSNLSMSDGVPFIGGNRHELPHTGNNVVVGEHPYGEHPSRTLFVRNINSNVEDSELKSLFEEYGEIRNLYTACKHRGFVMISYYDIRHARIAMRELQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDSSI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G465210
TK1151 IDTkA05G465210
OH-1004 IDLXL04_022408
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G465210
LocationChr05:116591534-116596094 (+)
DescriptionSimilar to ML2: Protein MEI2-like 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g29400 Probable RNA-binding protein that plays a role in meiosis and vegetative growth. No verified direct reference in this release
At4g18120 Probable RNA-binding protein that plays a role in meiosis and vegetative growth. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0719800 Probable RNA-binding protein that may play a role in growth regulation. No verified direct reference in this release
Os02g0319100 Probable RNA-binding protein that may play a role in growth regulation. No verified direct reference in this release
Os02g0517531 Probable RNA-binding protein that may play a role in growth regulation. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022408 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0045836 positive regulation of meiotic nuclear division Biological Process
GO:0045927 positive regulation of growth Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0005634 nucleus Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G29400
ath:AT2G42890
dosa:Os02g0319100
dosa:Os02g0719800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.559
Rank 1 · TkA05G465210 · TK1151
Cytoplasm0.443
Rank 2 · TkA05G465210 · TK1151
Cell membrane0.089
Rank 3 · TkA05G465210 · TK1151
Endoplasmic reticulum0.037
Rank 4 · TkA05G465210 · TK1151
Lysosome / Vacuole0.032
Rank 5 · TkA05G465210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13893RRM_5161-235 aa
PF22976RRM_10161-188 aa
PF14703PHM7_cyt163-190 aa
PF16842RRM_occluded164-231 aa
PF00076RRM_1166-230 aa
PF14605Nup35_RRM_2184-216 aa
PF03677UPF0137232-280 aa
PF13893RRM_5248-323 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G465210PF13893RRM_51612351.6e-1144.6
TkA05G465210PF22976RRM_101611880.06514.1
TkA05G465210PF14703PHM7_cyt1631900.008717.0
TkA05G465210PF16842RRM_occluded1642316.1e-1039.5
TkA05G465210PF00076RRM_11662302.9e-29101.4
TkA05G465210PF14605Nup35_RRM_21842160.311.7
TkA05G465210PF03677UPF01372322800.1712.4
TkA05G465210PF13893RRM_52483231.6e-1144.6
TkA05G465210PF16842RRM_occluded2503166.1e-1039.5
TkA05G465210PF00076RRM_12513162.9e-29101.4
TkA05G465210PF22976RRM_102513130.06514.1
TkA05G465210PF07576BRAP22513080.1313.2
TkA05G465210PF14605Nup35_RRM_22693020.311.7
TkA05G465210PF14703PHM7_cyt2753020.008717.0
TkA05G465210PF04059RRM_23924157.5e-54180.7
TkA05G465210PF04059RRM_25446407.5e-54180.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VWF5Arabidopsis thalianasp|Q8VWF5|AML5_ARATH Protein MEI2-like 551.900%Swiss-ProtHigh
Q9SVV9Arabidopsis thalianasp|Q9SVV9|AML3_ARATH Protein MEI2-like 348.100%Swiss-ProtMedium
Q6ZI17Oryza sativa subsp. japonicasp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 251.200%Swiss-ProtHigh
Q6EQX3Oryza sativa subsp. japonicasp|Q6EQX3|OML5_ORYSJ Protein MEI2-like 546.400%Swiss-ProtMedium
Q64M78Oryza sativa subsp. japonicasp|Q64M78|OML4_ORYSJ Protein MEI2-like 444.400%Swiss-ProtMedium

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