TkA05G452440 | RubberDandelionOmics

Gene overview

TkA05G452440

Reference: TK1151 Chr: Chr05 Coordinates: 113275754-113278030 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1439 bp · TkA05G452440|TK1151|cDNA

TTTTTCTCTCGTTTGTTTTTATTTGTATGATGTTCCCTATCAAATACTTCATCGCTAAGGTTGAAACATATATAAGGATTTAGGGAATTAAAGACACAAAGAATCTCATCTTCAGATTTAGATTTAAGAATTTTTTTTTCTTGCTTCACAAACTGCAATTGCTTACTCAGAGAAGGATGCAGTTTTCCACTGGTCTTATATTACTCCTTCCTGTATTGGGTATTATTTTTCGATATTTACAGAAACATCAGGAGGAAGAT...

CDS

Download CDS FASTA

1263 bp · TkA05G452440|TK1151|CDS

ATGCAGTTTTCCACTGGTCTTATATTACTCCTTCCTGTATTGGGTATTATTTTTCGATATTTACAGAAACATCAGGAGGAAGATGATGGGCAGCAGAATAATTCATCCATGTCATCATCACCGGATCAACAACAATCCTTACACGAAGAAGAAGAAGAAGAAGATGGTCAGAGGAAGGATTTATTCTCATCAACCTTACAGGATAATCAATGTCGTCACTTTTCACTTGCTGAAATCAAGTTGGCCACCAATGATTTTGA...

Protein

Download Protein FASTA

421 aa · TkA05G452440|TK1151|PROTEIN

MQFSTGLILLLPVLGIIFRYLQKHQEEDDGQQNNSSMSSSPDQQQSLHEEEEEEDGQRKDLFSSTLQDNQCRHFSLAEIKLATNDFDDVIGKGGFGNVYKGTIDSGEDVAIKRLKLDSSQGAAEFQAEIEMLSQFRHIHIVPLLGYHEGSDEREMILIYKYMSNGSLEDHLHKRRVEGTNSSPLTWVQRLQICIGAARGLDYLHSGTAVESRVIHRDIKSSNILLDENLAAKISDFGLSRIGPVNLVGTTNVYTDQIKGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G452440`
TK1151 ID	TkA05G452440
OH-1004 ID	LXL04_022235
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 54.113 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G452440

Location Chr05:113275754-113278030 (+)

Description Similar to PBL4: Probable serine/threonine-protein kinase PBL4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At2g21480`	Probable receptor-like protein kinase At2g21480.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022235 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G26970

ath:AT2G02800

ath:AT2G17220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.736

Rank 1 · TkA05G452440 · TK1151

Cytoplasm0.188

Rank 2 · TkA05G452440 · TK1151

Nucleus0.151

Rank 3 · TkA05G452440 · TK1151

Endoplasmic reticulum0.056

Rank 4 · TkA05G452440 · TK1151

Golgi apparatus0.032

Rank 5 · TkA05G452440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase22-75 aa

PF12330Haspin_kinase78-131 aa

PF07714PK_Tyr_Ser-Thr86-364 aa

PF00069Pkinase88-362 aa

PF03109ABC189-115 aa

PF01636APH114-169 aa

PF03109ABC1208-240 aa

PF01636APH209-244 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G452440	`PF00069`	Pkinase	22	75	4.3e-43	148.3
TkA05G452440	`PF12330`	Haspin_kinase	78	131	0.068	12.9
TkA05G452440	`PF07714`	PK_Tyr_Ser-Thr	86	364	1.4e-46	159.6
TkA05G452440	`PF00069`	Pkinase	88	362	4.3e-43	148.3
TkA05G452440	`PF03109`	ABC1	89	115	0.0013	18.7
TkA05G452440	`PF01636`	APH	114	169	0.026	15.0
TkA05G452440	`PF03109`	ABC1	208	240	0.0013	18.7
TkA05G452440	`PF01636`	APH	209	244	0.026	15.0
TkA05G452440	`PF12330`	Haspin_kinase	215	242	0.068	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	50.600%	Swiss-Prot	High
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	49.800%	Swiss-Prot	Medium
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	49.700%	Swiss-Prot	Medium
`Q9SJT0`	Arabidopsis thaliana	sp\|Q9SJT0\|Y2214_ARATH Probable receptor-like protein kinase At2g21480	49.700%	Swiss-Prot	Medium
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	52.300%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card