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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G407200
Reference: TK1151 Chr: Chr05 Coordinates: 101261206-101262591 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1221 bp · TkA05G407200|TK1151|cDNA

ATGGAGGAGTGTTTTCACGCGCACCAGTTCTTCAGGATTCCAAAATTCAATCAACATATGCAGGAGAATCAGCTCTACCACAAAGTTGTATCCTATCTCAATTCGTTACCATCAGCCGCGGATTCCGATTTCGTCAATCTTCAACACATTCATAAAGTCGCGGAGGAGATCGAGCTAAAGAGTAACGAAGTCAGGCTATACATCAACGCGGAAACCGAACCAGAGAAGAACGGGAGATGGAAATCGATTCCGTTCACACA...

CDS

Download CDS FASTA

1221 bp · TkA05G407200|TK1151|CDS

ATGGAGGAGTGTTTTCACGCGCACCAGTTCTTCAGGATTCCAAAATTCAATCAACATATGCAGGAGAATCAGCTCTACCACAAAGTTGTATCCTATCTCAATTCGTTACCATCAGCCGCGGATTCCGATTTCGTCAATCTTCAACACATTCATAAAGTCGCGGAGGAGATCGAGCTAAAGAGTAACGAAGTCAGGCTATACATCAACGCGGAAACCGAACCAGAGAAGAACGGGAGATGGAAATCGATTCCGTTCACACA...

Protein

Download Protein FASTA

406 aa · TkA05G407200|TK1151|PROTEIN

MEECFHAHQFFRIPKFNQHMQENQLYHKVVSYLNSLPSAADSDFVNLQHIHKVAEEIELKSNEVRLYINAETEPEKNGRWKSIPFTHPATIDTAMIDSEFKTKVKSDLEQFLKSKQYYHRLGRVWKRSYLLYGQSGTGKSSFIAGMAKFLCYDLYDVDMSKVTGDSDLKLLLLQTTSKSMIVVEDLDRYLFEKEKSTAVSLSGILNFMDGIISCCGEERVMVFTVSNKDQIDPTVLRPGRIDVHIHFPLCDFSSFKNLAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G407200
TK1151 IDTkA05G407200
OH-1004 IDLXL04_021572
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)87.900
Protein coverage (%)TK1151 100.000 / OH-1004 87.643
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G407200
LocationChr05:101261206-101262591 (+)
DescriptionSimilar to At2g46620: AAA-ATPase At2g46620
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g46620 AAA-ATPase At2g46620. No verified direct reference in this release
At5g17760 AAA-ATPase At5g17760. No verified direct reference in this release
At3g28580 AAA-ATPase At3g28580. No verified direct reference in this release
At4g25835 AAA-ATPase At4g25835. No verified direct reference in this release
At3g50930 Protein HYPER-SENSITIVITY-RELATED 4. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021572 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000304 response to singlet oxygen Biological Process
GO:0006950 response to stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT2G46620
ath:AT3G28540
ath:AT3G28580
ath:AT4G25835
ath:AT5G57480
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.356
Rank 1 · TkA05G407200 · TK1151
Cytoplasm0.325
Rank 2 · TkA05G407200 · TK1151
Cell membrane0.116
Rank 3 · TkA05G407200 · TK1151
Mitochondrion0.100
Rank 4 · TkA05G407200 · TK1151
Plastid0.078
Rank 5 · TkA05G407200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14363AAA_assoc4-40 aa
PF25201nSTAND630-69 aa
PF05673DUF81575-229 aa
PF27394Aq_aa2779-93 aa
PF25568AAA_lid_At3g2854088-114 aa
PF27113GbsR_C92-124 aa
PF13191AAA_16117-151 aa
PF03193RsgA_GTPase125-146 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G407200PF14363AAA_assoc4400.04914.8
TkA05G407200PF25201nSTAND630690.1313.0
TkA05G407200PF05673DUF815752290.0001122.2
TkA05G407200PF27394Aq_aa2779930.09313.3
TkA05G407200PF25568AAA_lid_At3g28540881143.9e-1246.6
TkA05G407200PF27113GbsR_C921240.0714.4
TkA05G407200PF13191AAA_161171510.01816.3
TkA05G407200PF03193RsgA_GTPase1251460.07113.6
TkA05G407200PF12775AAA_71261740.1312.6
TkA05G407200PF13479AAA_241271540.00318.0
TkA05G407200PF13555AAA_291271510.01116.2
TkA05G407200PF13401AAA_221271680.07914.0
TkA05G407200PF25201nSTAND61281480.1313.0
TkA05G407200PF00004AAA1292491.7e-1248.6
TkA05G407200PF07728AAA_51301690.02715.2
TkA05G407200PF27394Aq_aa271301970.09313.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IJ77Arabidopsis thalianasp|F4IJ77|AATP4_ARATH AAA-ATPase At2g4662050.000%Swiss-ProtHigh
Q9FN75Arabidopsis thalianasp|Q9FN75|AATPI_ARATH AAA-ATPase At5g1776040.200%Swiss-ProtMedium
Q9LJJ7Arabidopsis thalianasp|Q9LJJ7|AATP9_ARATH AAA-ATPase At3g2858037.000%Swiss-ProtMedium
Q8RY66Arabidopsis thalianasp|Q8RY66|AATPD_ARATH AAA-ATPase At4g2583538.100%Swiss-ProtMedium
Q8VZG2Arabidopsis thalianasp|Q8VZG2|HSR4_ARATH Protein HYPER-SENSITIVITY-RELATED 442.900%Swiss-ProtMedium

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