LXL04_021572 | RubberDandelionOmics

Gene overview

LXL04_021572

Reference: OH-1004 Chr: Chr04 Coordinates: 132569741-132571321 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1581 bp · LXL04_021572|LXL04_021572|OH1004|cDNA

ATGGTCCGGCAGAGCCGTCTTATGAAAGCCTTTAAACGTCATCTGCCTCCTTTAACTATTCTTCATGTGGGTTTCCTTTCATACATCATCATGTTTCTCTTAGTTTTGCTAGCTGCTATCCTCGGTTTTTTGCTGATTCCTCGAGTATTATCAAGGACCTCCATCGGCCACTTCCTGCAAAATCGATGGCGGTTCATGGAGGAGTGTTTTCACGCGCACCAGTTCTTCAGGATTCCAAAATTCAATCAACATATGCAGGA...

CDS

Download CDS FASTA

1581 bp · LXL04_021572|LXL04_021572|OH1004|CDS

ATGGTCCGGCAGAGCCGTCTTATGAAAGCCTTTAAACGTCATCTGCCTCCTTTAACTATTCTTCATGTGGGTTTCCTTTCATACATCATCATGTTTCTCTTAGTTTTGCTAGCTGCTATCCTCGGTTTTTTGCTGATTCCTCGAGTATTATCAAGGACCTCCATCGGCCACTTCCTGCAAAATCGATGGCGGTTCATGGAGGAGTGTTTTCACGCGCACCAGTTCTTCAGGATTCCAAAATTCAATCAACATATGCAGGA...

Protein

Download Protein FASTA

526 aa · LXL04_021572|LXL04_021572|OH1004|PROTEIN

MVRQSRLMKAFKRHLPPLTILHVGFLSYIIMFLLVLLAAILGFLLIPRVLSRTSIGHFLQNRWRFMEECFHAHQFFRIPKFNQHMQENQLYHKVVSYLNSLPSAADSDFVNLFSGNNKANEITLEINADQVFPDVFLGSRVYWKLENDCFVLKIRRKEKRRILSTYLQHIHKVAEEIELKSNEVRLYINAETEPEKNGRWKSIPFTHPATIDTAMIDSEFKTKVKSDLEQFLKSKQYYHRLGRVWKRSYLLYGQSGTGKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021572`
TK1151 ID	TkA05G407200
OH-1004 ID	LXL04_021572
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.900
Protein coverage (%)	TK1151 100.000 / OH-1004 87.643 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021572

Location Chr04:132569741-132571321 (+)

Description Similar to At2g46620: AAA-ATPase At2g46620

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g46620`	AAA-ATPase At2g46620.	No verified direct reference in this release
`At4g25835`	AAA-ATPase At4g25835.	No verified direct reference in this release
`At5g57480`	AAA-ATPase At5g57480.	No verified direct reference in this release
`At3g28580`	AAA-ATPase At3g28580.	No verified direct reference in this release
`At3g28540`	AAA-ATPase At3g28540.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021572 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000304 response to singlet oxygen Biological Process

GO:0006950 response to stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

KEGG gene cross-reference

ath:AT2G46620

ath:AT3G28540

ath:AT3G28580

ath:AT4G25835

ath:AT5G57480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.212

Rank 1 · LXL04_021572 · OH-1004

Mitochondrion0.188

Rank 2 · LXL04_021572 · OH-1004

Endoplasmic reticulum0.185

Rank 3 · LXL04_021572 · OH-1004

Cytoplasm0.183

Rank 4 · LXL04_021572 · OH-1004

Cell membrane0.125

Rank 5 · LXL04_021572 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14363.12AAA_assoc55-145 aa

PF00004.36AAA249-369 aa

PF25568.1AAA_lid_At3g28540370-435 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021572	`PF14363.12`	AAA_assoc	55	145	5.3e-09	37.1
LXL04_021572	`PF00004.36`	AAA	249	369	3.1e-12	47.8
LXL04_021572	`PF25568.1`	AAA_lid_At3g28540	370	435	5.7e-12	46.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IJ77`	Arabidopsis thaliana	AAA-ATPase At2g46620	53.438%	Swiss-Prot	strong database homology
`Q8RY66`	Arabidopsis thaliana	AAA-ATPase At4g25835	34.383%	Swiss-Prot	moderate database homology
`Q9FKM3`	Arabidopsis thaliana	AAA-ATPase At5g57480	32.096%	Swiss-Prot	moderate database homology
`Q9LJJ7`	Arabidopsis thaliana	AAA-ATPase At3g28580	33.596%	Swiss-Prot	moderate database homology
`Q9LH82`	Arabidopsis thaliana	AAA-ATPase At3g28540	32.840%	Swiss-Prot	moderate database homology

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