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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G012410
Reference: TK1151 Chr: Chr05 Coordinates: 3539112-3540759 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1038 bp · TkA05G012410|TK1151|cDNA

ATGCAACAAGAAGGATTTCAGGCAACCGGGCATACTTTCGTGAGTGTATTAAATGCATGTTCACGTGGATTGGATTTAAGACACGGGAAGCAAGTTCACGGAAATATCATAACTTGTGGTTCACTCTCCAATCCTTTTATCTGCAATGCTTTGACTGATTTCTATGCTAAATGTGGTGAAATTAACACTGCTCGTTGGTTATTTAACCATATGTCTAACAAGAATGCGGTTTCATGGAATTCAATGATTTCTGGATGCAT...

CDS

Download CDS FASTA

1038 bp · TkA05G012410|TK1151|CDS

ATGCAACAAGAAGGATTTCAGGCAACCGGGCATACTTTCGTGAGTGTATTAAATGCATGTTCACGTGGATTGGATTTAAGACACGGGAAGCAAGTTCACGGAAATATCATAACTTGTGGTTCACTCTCCAATCCTTTTATCTGCAATGCTTTGACTGATTTCTATGCTAAATGTGGTGAAATTAACACTGCTCGTTGGTTATTTAACCATATGTCTAACAAGAATGCGGTTTCATGGAATTCAATGATTTCTGGATGCAT...

Protein

Download Protein FASTA

345 aa · TkA05G012410|TK1151|PROTEIN

MQQEGFQATGHTFVSVLNACSRGLDLRHGKQVHGNIITCGSLSNPFICNALTDFYAKCGEINTARWLFNHMSNKNAVSWNSMISGCMKNGLPEECLELFHEMKMLTNNIKPDKFTISSVVSSCARLAALTYGQTIHAKSVHMGVDKDTLVSTALVDMYAKCGQPSQSREIFDKINSKTIVSWNSMILGYAQNGKDLDSLRLYEEMLKDKIKPDGITFIGVLSACIHEDRTHPESQLIYQRLNEMIRRLVECGFSPNKDLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G012410
TK1151 IDTkA05G012410
OH-1004 IDLXL04_019026
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)62.700
Protein coverage (%)TK1151 100.000 / OH-1004 79.137
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G012410
LocationChr05:3539112-3540759 (-)
DescriptionSimilar to PCMP-H60: Pentatricopeptide repeat-containing protein At2g27610
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At4g21065 Pentatricopeptide repeat-containing protein At4g21065. No verified direct reference in this release
At2g01510 Pentatricopeptide repeat-containing protein At2g01510, mitochondrial. No verified direct reference in this release
At1g56690 Pentatricopeptide repeat-containing protein At1g56690, mitochondrial. No verified direct reference in this release
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019026 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G68930
ath:AT2G27610
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.717
Rank 1 · TkA05G012410 · TK1151
Plastid0.145
Rank 2 · TkA05G012410 · TK1151
Nucleus0.065
Rank 3 · TkA05G012410 · TK1151
Cytoplasm0.041
Rank 4 · TkA05G012410 · TK1151
Cell membrane0.009
Rank 5 · TkA05G012410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_21-21 aa
PF13812PPR_31-26 aa
PF01535PPR12-39 aa
PF29070MSC6_N16-122 aa
PF17177PPR_long17-177 aa
PF00637Clathrin39-107 aa
PF17049AEP144-83 aa
PF13041PPR_246-75 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G012410PF13041PPR_21217.3e-32110.0
TkA05G012410PF13812PPR_31261.6e-0835.2
TkA05G012410PF01535PPR12394.5e-2999.3
TkA05G012410PF29070MSC6_N161222e-0627.9
TkA05G012410PF17177PPR_long171770.001318.8
TkA05G012410PF00637Clathrin391070.000321.3
TkA05G012410PF17049AEP144830.02414.4
TkA05G012410PF13041PPR_246757.3e-32110.0
TkA05G012410PF01535PPR47744.5e-2999.3
TkA05G012410PF14475Mso1_Sec1_bdg47580.07513.3
TkA05G012410PF12854PPR_155719.4e-1038.8
TkA05G012410PF23546Zn_ribbon_TOP3B56590.2211.9
TkA05G012410PF13041PPR_2741257.3e-32110.0
TkA05G012410PF12854PPR_1751039.4e-1038.8
TkA05G012410PF13812PPR_3751211.6e-0835.2
TkA05G012410PF01535PPR771034.5e-2999.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317028.400%Swiss-ProtLow
A8MQA3Arabidopsis thalianasp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g2106529.400%Swiss-ProtLow
Q9ZVF4Arabidopsis thalianasp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510, mitochondrial26.800%Swiss-ProtLow
Q9FXB9Arabidopsis thalianasp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial30.600%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333027.600%Swiss-ProtLow

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