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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_019026
Reference: OH-1004 Chr: Chr04 Coordinates: 22325088-22327175 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2088 bp · LXL04_019026|LXL04_019026|OH1004|cDNA

ATGCACCCAAAGTACAAGCTTAAGGAAGCCGTTGATTCTCTTTACCGACACAATCATGTCAACCCTGAAGCCTACACTCGTCTTGTCCTCGATTGTGTTCGATTCAGCGACGCCCATCAAGCCAAACGCTTACAATCTCACATGGACGAAAATCTCTACGAACCCACCACCACTTTTATCCATAATCGTCTTCTCGACGTGTACGCCAAGTCTGGCAAGCTTTTGGACGCACAGAACCTGTTCGATAAATTGCCCCAACG...

CDS

Download CDS FASTA

2088 bp · LXL04_019026|LXL04_019026|OH1004|CDS

ATGCACCCAAAGTACAAGCTTAAGGAAGCCGTTGATTCTCTTTACCGACACAATCATGTCAACCCTGAAGCCTACACTCGTCTTGTCCTCGATTGTGTTCGATTCAGCGACGCCCATCAAGCCAAACGCTTACAATCTCACATGGACGAAAATCTCTACGAACCCACCACCACTTTTATCCATAATCGTCTTCTCGACGTGTACGCCAAGTCTGGCAAGCTTTTGGACGCACAGAACCTGTTCGATAAATTGCCCCAACG...

Protein

Download Protein FASTA

695 aa · LXL04_019026|LXL04_019026|OH1004|PROTEIN

MHPKYKLKEAVDSLYRHNHVNPEAYTRLVLDCVRFSDAHQAKRLQSHMDENLYEPTTTFIHNRLLDVYAKSGKLLDAQNLFDKLPQRDVFTYNAMLKAYSTTGSLDDLQALFNDMPCRDFVSYNTVIAGLASSGRARHALKVFVKMQQEGFQATGHTFVSVLNACSRGLDLRHGKQVHGNIITCGSLSNPFICNALTDFYAKCGEINTARWLFNHMSNKNAVSWNSMISGCMKNGLPEECLELFHEMKLSNIKPDMVTVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_019026
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_019026
LocationChr04:22325088-22327175 (-)
DescriptionSimilar to PCMP-H60: Pentatricopeptide repeat-containing protein At2g27610
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g27610 Pentatricopeptide repeat-containing protein At2g27610. No verified direct reference in this release
At1g68930 Putative pentatricopeptide repeat-containing protein At1g68930. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019026 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G68930
ath:AT2G27610
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.656
Rank 1 · LXL04_019026 · OH-1004
Plastid0.205
Rank 2 · LXL04_019026 · OH-1004
Nucleus0.049
Rank 3 · LXL04_019026 · OH-1004
Cytoplasm0.033
Rank 4 · LXL04_019026 · OH-1004
Cell membrane0.006
Rank 5 · LXL04_019026 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_287-118 aa
PF12854.14PPR_1118-147 aa
PF13041.13PPR_2119-166 aa
PF01535.27PPR121-151 aa
PF17177.11PPR_long162-278 aa
PF13041.13PPR_2219-268 aa
PF01535.27PPR222-251 aa
PF12854.14PPR_1251-281 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_019026PF13041.13PPR_2871188.2e-73241.1
LXL04_019026PF12854.14PPR_11181473.5e-41139.3
LXL04_019026PF13041.13PPR_21191668.2e-73241.1
LXL04_019026PF01535.27PPR1211511e-73239.3
LXL04_019026PF17177.11PPR_long1622782.7e-1453.8
LXL04_019026PF13041.13PPR_22192688.2e-73241.1
LXL04_019026PF01535.27PPR2222511e-73239.3
LXL04_019026PF12854.14PPR_12512813.5e-41139.3
LXL04_019026PF13041.13PPR_22853348.2e-73241.1
LXL04_019026PF12854.14PPR_12863133.5e-41139.3
LXL04_019026PF13812.13PPR_32863325.2e-30104.0
LXL04_019026PF01535.27PPR2883181e-73239.3
LXL04_019026PF29070.1MSC6_N3604834.2e-1969.6
LXL04_019026PF13041.13PPR_23874348.2e-73241.1
LXL04_019026PF01535.27PPR3894181e-73239.3
LXL04_019026PF20431.5E_motif5065663e-1763.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUW3Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g2761037.520%Swiss-Protmoderate database homology
Q9CAA8Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g6893033.468%Swiss-Protmoderate database homology
Q9SY02Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g0275035.414%Swiss-Protmoderate database homology
Q9LNU6Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g2023035.047%Swiss-Protmoderate database homology
Q3E6Q1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g11290, chloroplastic37.481%Swiss-Protmoderate database homology

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