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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G436120
Reference: TK1151 Chr: Chr04 Coordinates: 109975007-109981772 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2823 bp · TkA04G436120|TK1151|cDNA

GCAAAACGTCCTTCATGAACCCTAAATTTTAAACATTCTTGACATTATTCTAGTCGGGAAGGGGTTCGCTATGACGTTTCGATCTGTGTTCGATGCTCCCTTCATTAGAACTGAATTCGATCAAGCTGGAATCAGTACTCAGTTCATCCCTACAATTTGGAAATACGTCGTACAGAATCCTAATTGCGAATGGCGAGATATCCCTTCACTGCCTTCCGCAGCTTACTCGTTACTTTCTTCCAAGTTCAAATCCTGCACTT...

CDS

Download CDS FASTA

2346 bp · TkA04G436120|TK1151|CDS

ATGACGTTTCGATCTGTGTTCGATGCTCCCTTCATTAGAACTGAATTCGATCAAGCTGGAATCAGTACTCAGTTCATCCCTACAATTTGGAAATACGTCGTACAGAATCCTAATTGCGAATGGCGAGATATCCCTTCACTGCCTTCCGCAGCTTACTCGTTACTTTCTTCCAAGTTCAAATCCTGCACTTCTATCGTCGACTCCGTTTTCAACTCCACGGATCAAGTTACCACCAAACTCCTCATTAAGTTGCAGAATGG...

Protein

Download Protein FASTA

781 aa · TkA04G436120|TK1151|PROTEIN

MTFRSVFDAPFIRTEFDQAGISTQFIPTIWKYVVQNPNCEWRDIPSLPSAAYSLLSSKFKSCTSIVDSVFNSTDQVTTKLLIKLQNGESIEAVIMRYDSSLGKLNGKPRPGGPRSTLCISSQVGCKMGCKFCATGTMGFKSNLSTGEIVEQLVHASRISPIRNVVFMGMGEPLNNYNALVEAIRVMTAFPFQLSPKKITVSTVGIIPAIKKFHGDLPNLNLAVSLHAPVQDIRCKIMPAARAFPLERLMNALAEYQKKSQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G436120
TK1151 IDTkA04G436120
OH-1004 IDLXL04_038498
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G436120
LocationChr04:109975007-109981772 (+)
DescriptionSimilar to rlmN1: Dual-specificity RNA methyltransferase RlmN 1 (Myxococcus xanthus (strain DK 1622)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07570 Possible bi-functional kinase.
Novel protein kinase of Arabidopsis thaliana (APK1) that phosphorylates tyrosine, serine and threonine.1992 · DOI: 10.1007/bf00046450

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0110900 Functions downstream of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity.
OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.2014 · DOI: 10.1111/tpj.12710
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038498 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0030488 tRNA methylation Biological Process
GO:0070475 rRNA base methylation Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0043680 filiform apparatus Cellular Component
GO:0000049 tRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G46290
mxa:MXAN_1275
nmr:Nmar_1385
sfu:Sfum_4057
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.245
Rank 1 · TkA04G436120 · TK1151
Nucleus0.187
Rank 2 · TkA04G436120 · TK1151
Cell membrane0.185
Rank 3 · TkA04G436120 · TK1151
Plastid0.161
Rank 4 · TkA04G436120 · TK1151
Endoplasmic reticulum0.132
Rank 5 · TkA04G436120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04055Radical_SAM120-278 aa
PF19238Radical_SAM_2121-133 aa
PF13353Fer4_12123-188 aa
PF19238Radical_SAM_2221-293 aa
PF10961SelK_SelG267-297 aa
PF10961SelK_SelG409-452 aa
PF25184YxzE414-451 aa
PF00069Pkinase476-745 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G436120PF04055Radical_SAM1202782.5e-1351.2
TkA04G436120PF19238Radical_SAM_21211330.2611.7
TkA04G436120PF13353Fer4_121231880.006217.6
TkA04G436120PF19238Radical_SAM_22212930.2611.7
TkA04G436120PF10961SelK_SelG2672970.003718.6
TkA04G436120PF10961SelK_SelG4094520.003718.6
TkA04G436120PF25184YxzE4144510.4612.2
TkA04G436120PF00069Pkinase4767455e-32112.0
TkA04G436120PF07714PK_Tyr_Ser-Thr4797482.7e-40139.0
TkA04G436120PF01636APH5045960.1412.6
TkA04G436120PF01636APH5896120.1412.6
TkA04G436120PF04055Radical_SAM6036332.5e-1351.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q06548Arabidopsis thalianasp|Q06548|PBL9_ARATH Probable serine/threonine-protein kinase PBL936.700%Swiss-ProtLow
Q65XV8Oryza sativa subsp. japonicasp|Q65XV8|RK176_ORYSJ Receptor-like cytoplasmic kinase 17635.300%Swiss-ProtLow

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