RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G431440
Reference: TK1151 Chr: Chr04 Coordinates: 108818401-108823522 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3457 bp · TkA04G431440|TK1151|cDNA

CTGAAAATTAAAAACGGACAGAGTAGTCTTTGACTCCATTATCAGACAAACGGTGTTACGCTGCAAGTCTTTCGCGCCAAAAAAGATGAGTTTGGATTCTTCTCATCCAACCAAATCAGGATCCAATTCCAAGAGAAGCTTCAATTCGACAAATAGCAACAACACTGGTCGGAACAATAATAACAAAAGGAATAGGAAGAAAGAGGGGGACAGTGGACAACAAACCCTAGGCATGGCTTGGGGTTCTAATTCTCGGTCTT...

CDS

Download CDS FASTA

3006 bp · TkA04G431440|TK1151|CDS

ATGAGTTTGGATTCTTCTCATCCAACCAAATCAGGATCCAATTCCAAGAGAAGCTTCAATTCGACAAATAGCAACAACACTGGTCGGAACAATAATAACAAAAGGAATAGGAAGAAAGAGGGGGACAGTGGACAACAAACCCTAGGCATGGCTTGGGGTTCTAATTCTCGGTCTTCTTCTCGTTCCTCTTTTCGTAGTGCCCCGTTCACTGATGTTGGCAGTTATATGGCAGTAAAGAACAGGAAACTACATGAGCAATT...

Protein

Download Protein FASTA

1001 aa · TkA04G431440|TK1151|PROTEIN

MSLDSSHPTKSGSNSKRSFNSTNSNNTGRNNNNKRNRKKEGDSGQQTLGMAWGSNSRSSSRSSFRSAPFTDVGSYMAVKNRKLHEQFDAQASSSSHGGSGSKKPVFYGVSIFVDGYTVPSTQELRGYMLKHGGRFENYFSRQRVTHIICSNLPGSKVKNLRSFSRGLPVVKPTWILDCIAADKLLSWVPYQLEQIASEANNQPKLSTFLGLKSNMVSNDPANGPSTSDNNISEVSNSAEGVKQANQEFDFHMHDSFDEEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G431440
TK1151 IDTkA04G431440
OH-1004 IDLXL04_038456
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)89.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G431440
LocationChr04:108818401-108823522 (-)
DescriptionSimilar to REV1: DNA repair protein REV1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44750 Deoxycytidyl transferase involved in DNA damage tolerance (DDT) and translesion synthesis (TLS).
AtREV1, a Y-family DNA polymerase in Arabidopsis, has deoxynucleotidyl transferase activity in vitro.2007 · DOI: 10.1104/pp.107.101980
Two translesion synthesis DNA polymerase genes, AtPOLH and AtREV1, are involved in development and UV light resistance in Arabidopsis.2008 · DOI: 10.1016/j.jplph.2007.11.012

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038456 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006302 double-strand break repair Biological Process
GO:0006974 DNA damage response Biological Process
GO:0009411 response to UV Biological Process
GO:0010224 response to UV-B Biological Process
GO:0019985 translesion synthesis Biological Process
GO:0042276 error-prone translesion synthesis Biological Process
GO:0070987 error-free translesion synthesis Biological Process
GO:0071897 DNA biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
KEGG gene cross-reference
ath:AT5G44750
gga:418703
mmu:56210
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.933
Rank 1 · TkA04G431440 · TK1151
Cytoplasm0.149
Rank 2 · TkA04G431440 · TK1151
Mitochondrion0.039
Rank 3 · TkA04G431440 · TK1151
Cell membrane0.017
Rank 4 · TkA04G431440 · TK1151
Golgi apparatus0.007
Rank 5 · TkA04G431440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00533BRCT103-179 aa
PF16589BRCT_2104-190 aa
PF16759LIG3_BRCT105-181 aa
PF12738PTCB-BRCT109-174 aa
PF16770RTT107_BRCT_5141-191 aa
PF21999IMS_HHH_1288-296 aa
PF00817IMS366-515 aa
PF14377UBM478-486 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G431440PF00533BRCT1031798.8e-1142.6
TkA04G431440PF16589BRCT_21041901.2e-0835.9
TkA04G431440PF16759LIG3_BRCT1051811.1e-0526.4
TkA04G431440PF12738PTCB-BRCT1091745.4e-0627.0
TkA04G431440PF16770RTT107_BRCT_51411910.1212.9
TkA04G431440PF21999IMS_HHH_12882962.4e-2486.3
TkA04G431440PF00817IMS3665158.4e-45153.0
TkA04G431440PF14377UBM4784860.3711.0
TkA04G431440PF11798IMS_HHH5275583.3e-0627.7
TkA04G431440PF21999IMS_HHH_15425922.4e-2486.3
TkA04G431440PF21704POLH-Rev1_HhH5465915.4e-0833.7
TkA04G431440PF11799IMS_C6027203e-1970.2
TkA04G431440PF00817IMS6787028.4e-45153.0
TkA04G431440PF11798IMS_HHH6997093.3e-0627.7
TkA04G431440PF11799IMS_C7477703e-1970.2
TkA04G431440PF14377UBM7737910.3711.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A3EWL3Arabidopsis thalianasp|A3EWL3|REV1_ARATH Translesion synthesis protein REV148.800%Swiss-ProtMedium

JBrowse

View in Genome Browser