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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G415210
Reference: TK1151 Chr: Chr04 Coordinates: 104587626-104591077 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2248 bp · TkA04G415210|TK1151|cDNA

CCTTTCGACTTTTCCAACTCCTTTTGAAAGAAATCAGACTTCTCCAACTCCTTTCCAATATCTCGCCATTACTCCTCACACAGTCGACGCCATTACTCCTCACACAGTCGACGCCATAAGTCAAATCGATTGCTCCTCTAAAATCGATCGCTTCTCTGAAATCGATTCTGAAATCGCCGGATATGGAACTCGATTCTGCCCATTACTCTTGCATCTACCCCCTTCTTCATTAATGGACTTCCCATTTACACTGAAAAGGA...

CDS

Download CDS FASTA

957 bp · TkA04G415210|TK1151|CDS

ATGCCAGTTAGAGATCTACACTCCAGCAACATCATGTTATCCGGGTATATGAAATCCGGGGAGGTTCACCTCGCCCACAACCTGTTCGCTAATATGCCAACTAAAGACGATGTTTCCTATAGCACAATGATCACAGGATTTTCTCATAATGGGTACTTCGACGAAGCTTTCAATCTCTTCCAACAATCTCACGGCCTTGGATTACCACCAAACGAGGTAACCTTAACCGGAATTCTTTCCGTTTCCACACAATCCGGGGA...

Protein

Download Protein FASTA

318 aa · TkA04G415210|TK1151|PROTEIN

MPVRDLHSSNIMLSGYMKSGEVHLAHNLFANMPTKDDVSYSTMITGFSHNGYFDEAFNLFQQSHGLGLPPNEVTLTGILSVSTQSGEFQFAQILHCYLQKSGFVSRSIINNTLMDTYFKSGNTTVARSLFHKMPGKKNLVSWTTMVAGTAMQGHGQEAMELFHQMVESGIKPDSIAFISILYACSHAGLLDHGCKYFSMMTNDYKIEPSYEHYGCMVDLYGRAGELEKAYDFITKMPIEANDVIWRTLLGACWIHGDVEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G415210
TK1151 IDTkA04G415210
OH-1004 IDLXL04_038300
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)98.400
Protein coverage (%)TK1151 81.132 / OH-1004 50.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G415210
LocationChr04:104587626-104591077 (-)
DescriptionSimilar to PCMP-H71: Pentatricopeptide repeat-containing protein At1g74630
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74630 Pentatricopeptide repeat-containing protein At1g74630. No verified direct reference in this release
At3g26782 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial. No verified direct reference in this release
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038300 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G74630
ath:AT3G29230
ath:AT4G18840
ath:AT5G15300
ath:AT5G48910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.668
Rank 1 · TkA04G415210 · TK1151
Plastid0.179
Rank 2 · TkA04G415210 · TK1151
Nucleus0.044
Rank 3 · TkA04G415210 · TK1151
Cytoplasm0.034
Rank 4 · TkA04G415210 · TK1151
Cell membrane0.005
Rank 5 · TkA04G415210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_26-34 aa
PF01535PPR10-34 aa
PF12854PPR_110-32 aa
PF13812PPR_310-32 aa
PF20431E_motif19-38 aa
PF22330Rib_mS39_PPR23-48 aa
PF13041PPR_236-79 aa
PF12854PPR_136-61 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G415210PF13041PPR_26341.7e-36124.8
TkA04G415210PF01535PPR10347.3e-39130.0
TkA04G415210PF12854PPR_110321.2e-2280.1
TkA04G415210PF13812PPR_310324.4e-1143.4
TkA04G415210PF20431E_motif19381.4e-1970.8
TkA04G415210PF22330Rib_mS39_PPR23480.1113.0
TkA04G415210PF13041PPR_236791.7e-36124.8
TkA04G415210PF12854PPR_136611.2e-2280.1
TkA04G415210PF29070MSC6_N36616.7e-0729.5
TkA04G415210PF23276TPR_2437811.8e-0628.6
TkA04G415210PF01535PPR38637.3e-39130.0
TkA04G415210PF13812PPR_338814.4e-1143.4
TkA04G415210PF17177PPR_long391202.7e-0937.4
TkA04G415210PF12921ATP1342600.04914.2
TkA04G415210PF13176TPR_748620.2412.3
TkA04G415210PF13428TPR_1449620.005718.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CA54Arabidopsis thalianasp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g7463054.400%Swiss-ProtHigh
Q9LW32Arabidopsis thalianasp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial40.700%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631042.000%Swiss-ProtMedium
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic39.400%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399039.600%Swiss-ProtMedium

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