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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_038300
Reference: OH-1004 Chr: Chr09 Coordinates: 36791644-36793194 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1551 bp · LXL04_038300|LXL04_038300|OH1004|cDNA

ATGATCAATGGCACTTTCATGCCTCTCACACTATTAAAACGCTGCAAGACCCTTACATCCGTTACTCAACTTCACACCCACATCCTCAAAGCCGGGCTCGATTCTGATTCATTTATCGCCGGCAACCTCATCCTCCACTGCGCCACGCTCATCTCCGATGCTCTCCACTACGCCCACTCTCTCCTCCTCCATTCCCCACATCCAGACGCCTTCATGTACAACACCGTCATACGCGGATTCTCCGACTCAGATCACCCATA...

CDS

Download CDS FASTA

1551 bp · LXL04_038300|LXL04_038300|OH1004|CDS

ATGATCAATGGCACTTTCATGCCTCTCACACTATTAAAACGCTGCAAGACCCTTACATCCGTTACTCAACTTCACACCCACATCCTCAAAGCCGGGCTCGATTCTGATTCATTTATCGCCGGCAACCTCATCCTCCACTGCGCCACGCTCATCTCCGATGCTCTCCACTACGCCCACTCTCTCCTCCTCCATTCCCCACATCCAGACGCCTTCATGTACAACACCGTCATACGCGGATTCTCCGACTCAGATCACCCATA...

Protein

Download Protein FASTA

516 aa · LXL04_038300|LXL04_038300|OH1004|PROTEIN

MINGTFMPLTLLKRCKTLTSVTQLHTHILKAGLDSDSFIAGNLILHCATLISDALHYAHSLLLHSPHPDAFMYNTVIRGFSDSDHPYSSFTTFIDMRRNSNNLQPDSFSFAFSLKAAANLRSYDIGIQLHSQAILHGLHNHLYVGTTLVSMYAECGWISHARNVFDEIPQPNIVAWNALITACIRCSDVKGAESLYKRMPVRDLHSSNIMLSGYMKSGEVHLAHNLFANMPTKDDVSYSTMITGFSHNGHFHEAFNLFQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_038300
TK1151 IDTkA04G415210
OH-1004 IDLXL04_038300
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)98.400
Protein coverage (%)TK1151 81.132 / OH-1004 50.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_038300
LocationChr09:36791644-36793194 (-)
DescriptionSimilar to PCMP-H71: Pentatricopeptide repeat-containing protein At1g74630
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74630 Pentatricopeptide repeat-containing protein At1g74630. No verified direct reference in this release
At5g15300 Pentatricopeptide repeat-containing protein At5g15300. No verified direct reference in this release
At5g48910 Pentatricopeptide repeat-containing protein At5g48910. No verified direct reference in this release
At4g18840 Pentatricopeptide repeat-containing protein At4g18840. No verified direct reference in this release
At3g29230 Pentatricopeptide repeat-containing protein At3g29230. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038300 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G74630
ath:AT3G29230
ath:AT4G18840
ath:AT5G15300
ath:AT5G48910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.631
Rank 1 · LXL04_038300 · OH-1004
Plastid0.201
Rank 2 · LXL04_038300 · OH-1004
Nucleus0.045
Rank 3 · LXL04_038300 · OH-1004
Cytoplasm0.032
Rank 4 · LXL04_038300 · OH-1004
Cell membrane0.005
Rank 5 · LXL04_038300 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_268-116 aa
PF13041.13PPR_2171-203 aa
PF01535.27PPR174-202 aa
PF13041.13PPR_2234-277 aa
PF12854.14PPR_1234-259 aa
PF01535.27PPR236-265 aa
PF13041.13PPR_2336-383 aa
PF01535.27PPR338-368 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_038300PF13041.13PPR_2681162.6e-51172.2
LXL04_038300PF13041.13PPR_21712032.6e-51172.2
LXL04_038300PF01535.27PPR1742029.6e-54176.7
LXL04_038300PF13041.13PPR_22342772.6e-51172.2
LXL04_038300PF12854.14PPR_12342592e-29101.7
LXL04_038300PF01535.27PPR2362659.6e-54176.7
LXL04_038300PF13041.13PPR_23363832.6e-51172.2
LXL04_038300PF01535.27PPR3383689.6e-54176.7
LXL04_038300PF29070.1MSC6_N3544324.1e-1143.3
LXL04_038300PF17177.11PPR_long3544342.5e-0937.6
LXL04_038300PF20431.5E_motif4535154.1e-1969.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CA54Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g7463054.832%Swiss-Protstrong database homology
Q9LXF2Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g1530035.812%Swiss-Protmoderate database homology
Q9FI80Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g4891036.220%Swiss-Protmoderate database homology
O49399Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g1884035.060%Swiss-Protmoderate database homology
Q9LS72Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g2923034.323%Swiss-Protmoderate database homology

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