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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G371330
Reference: TK1151 Chr: Chr04 Coordinates: 93307399-93309144 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1548 bp · TkA04G371330|TK1151|cDNA

ATGCCATGTCGAGATTTTGTTTCTTACAATACCGTGATTGCAGGCTTGGCTTCAAGTGGTCGCGCAAGACACGCCTTGAAGGTGTTTGTTAAAATGCAACAAGAAGGATTTCAGGCAACCGGGCATACTTTCGTGAGTGTATTAAATGCATGTTCACGTGGATTGGATTTAAGACACGGGAAGCAAGTTCACGGAAATATCATAACTTGTGGTTCACTCTCCAATCCTTTTATCTGCAATGCTTTGACTGATTTCTATGC...

CDS

Download CDS FASTA

1548 bp · TkA04G371330|TK1151|CDS

ATGCCATGTCGAGATTTTGTTTCTTACAATACCGTGATTGCAGGCTTGGCTTCAAGTGGTCGCGCAAGACACGCCTTGAAGGTGTTTGTTAAAATGCAACAAGAAGGATTTCAGGCAACCGGGCATACTTTCGTGAGTGTATTAAATGCATGTTCACGTGGATTGGATTTAAGACACGGGAAGCAAGTTCACGGAAATATCATAACTTGTGGTTCACTCTCCAATCCTTTTATCTGCAATGCTTTGACTGATTTCTATGC...

Protein

Download Protein FASTA

515 aa · TkA04G371330|TK1151|PROTEIN

MPCRDFVSYNTVIAGLASSGRARHALKVFVKMQQEGFQATGHTFVSVLNACSRGLDLRHGKQVHGNIITCGSLSNPFICNALTDFYAKCGQLDEAHKLFTEVEDKDVISWTTMISGYVQNGKEEDALMLFNKMLTNNIKPDKFTISSVVSSCARLAALTYGQTIHAKSVHMGVDKDTLVSTALVDMYAKCGQPSQSREIFDKINSKTIVSWNSMILGYAQNGKDLDSLRLYEEMLKDKIKPDGITFIGVLSACIHEALIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G371330
TK1151 IDTkA04G371330
OH-1004 IDLXL04_019026
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)88.100
Protein coverage (%)TK1151 96.505 / OH-1004 81.007
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G371330
LocationChr04:93307399-93309144 (+)
DescriptionSimilar to PCMP-H60: Pentatricopeptide repeat-containing protein At2g27610
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At5g09950 Putative pentatricopeptide repeat-containing protein At5g09950. No verified direct reference in this release
At1g68930 Putative pentatricopeptide repeat-containing protein At1g68930. No verified direct reference in this release
At5g40410 Pentatricopeptide repeat-containing protein At5g40410, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019026 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G68930
ath:AT2G27610
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.665
Rank 1 · TkA04G371330 · TK1151
Plastid0.176
Rank 2 · TkA04G371330 · TK1151
Nucleus0.061
Rank 3 · TkA04G371330 · TK1151
Cytoplasm0.034
Rank 4 · TkA04G371330 · TK1151
Peroxisome0.007
Rank 5 · TkA04G371330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12854PPR_13-33 aa
PF13041PPR_25-52 aa
PF13812PPR_35-51 aa
PF01535PPR7-37 aa
PF23276TPR_248-55 aa
PF17177PPR_long19-153 aa
PF13170DUF400321-46 aa
PF29070MSC6_N26-104 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G371330PF12854PPR_13332.8e-2485.3
TkA04G371330PF13041PPR_25521.6e-47160.1
TkA04G371330PF13812PPR_35511.5e-2073.8
TkA04G371330PF01535PPR7378.6e-48158.0
TkA04G371330PF23276TPR_248559.4e-1039.2
TkA04G371330PF17177PPR_long191534e-1040.2
TkA04G371330PF13170DUF400321460.01815.3
TkA04G371330PF29070MSC6_N261041.9e-1247.7
TkA04G371330PF01535PPR43708.6e-48158.0
TkA04G371330PF00637Clathrin70990.03514.6
TkA04G371330PF18768RNPP_C751050.1212.6
TkA04G371330PF17049AEP1751190.1312.1
TkA04G371330PF13041PPR_2771031.6e-47160.1
TkA04G371330PF01535PPR781068.6e-48158.0
TkA04G371330PF14475Mso1_Sec1_bdg78900.1112.7
TkA04G371330PF13812PPR_3791051.5e-2073.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333039.600%Swiss-ProtMedium
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317038.200%Swiss-ProtMedium
Q9FIB2Arabidopsis thalianasp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g0995040.700%Swiss-ProtMedium
Q9CAA8Arabidopsis thalianasp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g6893036.500%Swiss-ProtMedium
Q9FND6Arabidopsis thalianasp|Q9FND6|PP411_ARATH Pentatricopeptide repeat-containing protein At5g40410, mitochondrial38.600%Swiss-ProtMedium

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