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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G348670
Reference: TK1151 Chr: Chr04 Coordinates: 88081426-88084956 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1923 bp · TkA04G348670|TK1151|cDNA

AAAAATCAAGAAATTTTGCCTCCCGCTATTTTCCATTTTGCTCCCCCAAAGTCCCAAACCCTCCCACTCGCCAATACTGAAGATTTGAAAATTTTGAAATTGAGAGAAGTGGTCGAGAAGATGAGGGAAGAAGATATCGAGAAATTGAGAGGAGTCGTCAGAGATTGCGTTAGTAAACATCTATACTCGTCGGCGATATTCTTCGCTGACAAGGTCGCCGCCTTCACTTCCGATCCCGCTGATATCTACATGCAAGCACA...

CDS

Download CDS FASTA

1749 bp · TkA04G348670|TK1151|CDS

AAAAATCAAGAAATTTTGCCTCCCGCTATTTTCCATTTTGCTCCCCCAAAGTCCCAAACCCTCCCACTCGCCAATACTGAAGATTTGAAAATTTTGAAATTGAGAGAAGTGGTCGAGAAGATGAGGGAAGAAGATATCGAGAAATTGAGAGGAGTCGTCAGAGATTGCGTTAGTAAACATCTATACTCGTCGGCGATATTCTTCGCTGACAAGGTCGCCGCCTTCACTTCCGATCCCGCTGATATCTACATGCAAGCACA...

Protein

Download Protein FASTA

582 aa · TkA04G348670|TK1151|PROTEIN

KNQEILPPAIFHFAPPKSQTLPLANTEDLKILKLREVVEKMREEDIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTSDPADIYMQAQALFLGRHYRRAFHLLNASQIVLRDLRFRYLAAKCLEELKEWDQCLLMLGEAKVDEYGNFSDTKDSNAMYLDKDSEDREINISSAICFLRGKAYEALENRSQARQWYKAAIRADPLCYEAIECLIENHMLTCEEEKSLLSSLQFAQEDSWLSSFYSCLIKKYDKVSVVEEKFKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G348670
TK1151 IDTkA04G348670
OH-1004 IDLXL04_037769
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 95.902
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G348670
LocationChr04:88081426-88084956 (-)
DescriptionSimilar to APC6: Anaphase-promoting complex subunit 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g78770 Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
The NOMEGA gene required for female gametophyte development encodes the putative APC6/CDC16 component of the Anaphase Promoting Complex in Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01925.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037769 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007346 regulation of mitotic cell cycle Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031145 anaphase-promoting complex-dependent catabolic process Biological Process
GO:0032297 negative regulation of DNA-templated DNA replication initiation Biological Process
GO:0032875 regulation of DNA endoreduplication Biological Process
GO:0045842 positive regulation of mitotic metaphase/anaphase transition Biological Process
GO:0051301 cell division Biological Process
GO:0051445 regulation of meiotic cell cycle Biological Process
GO:0070936 protein K48-linked ubiquitination Biological Process
GO:0070979 protein K11-linked ubiquitination Biological Process
GO:0141198 protein branched polyubiquitination Biological Process
KEGG gene cross-reference
ath:AT1G78770
hsa:8881
mmu:69957
sce:YKL022C
spo:2541592
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.494
Rank 1 · TkA04G348670 · TK1151
Nucleus0.439
Rank 2 · TkA04G348670 · TK1151
Golgi apparatus0.096
Rank 3 · TkA04G348670 · TK1151
Lysosome / Vacuole0.081
Rank 4 · TkA04G348670 · TK1151
Cell membrane0.060
Rank 5 · TkA04G348670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30049POG1_N29-61 aa
PF12895ANAPC359-138 aa
PF29407CFAP70_TPR_C59-139 aa
PF23300HEAT_Nup12075-109 aa
PF07719TPR_283-103 aa
PF13432TPR_1683-129 aa
PF13174TPR_683-102 aa
PF21033RMD1-3103-138 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G348670PF30049POG1_N29610.0315.0
TkA04G348670PF12895ANAPC3591388.8e-2484.4
TkA04G348670PF29407CFAP70_TPR_C591392.1e-0834.7
TkA04G348670PF23300HEAT_Nup120751090.02615.1
TkA04G348670PF07719TPR_2831032.4e-2896.6
TkA04G348670PF13432TPR_16831291.3e-0939.1
TkA04G348670PF13174TPR_6831020.8611.1
TkA04G348670PF21033RMD1-31031381.9e-0834.5
TkA04G348670PF13429TPR_151102290.03714.2
TkA04G348670PF14559TPR_191111361.3e-1145.3
TkA04G348670PF13428TPR_141141383.5e-1452.6
TkA04G348670PF07719TPR_21161322.4e-2896.6
TkA04G348670PF13174TPR_61161350.8611.1
TkA04G348670PF00515TPR_11191326.8e-2586.5
TkA04G348670PF24575TPR_Slam1261820.00219.2
TkA04G348670PF25068ARM_TT21_4th1581976.6e-0833.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B3DNN5Arabidopsis thalianasp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 678.200%Swiss-ProtHigh

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