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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G344010
Reference: TK1151 Chr: Chr04 Coordinates: 86953884-86958718 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3344 bp · TkA04G344010|TK1151|cDNA

GATTGATTAGATATCGAGCAACATTTAATGGGGTTTAGGTAGTTCATTATAAATAGAAGTATAGATCAAGAAACCAAAATTAAATTAAAAAAATTAAAAAAATACCAGAAGAATAGAGAAGTATTAAAGAGAGTAACCTCAGGCTCGTGAAGCAGCAGGCAAGAAGAGGAAATAATTTAAATTAAACAAAAAAACAATTCTGAAAAAAATATAAAAAAATCCATCATCTCCTTCCCTTCTCTTTCCTCTCTGTGAAACCC...

CDS

Download CDS FASTA

2106 bp · TkA04G344010|TK1151|CDS

ATGTCGCATTCACGGAAGCCGGATTCGGGGTTAGGGTTTGATACACTCTCCGATCGCCTCCGGAAGACAGTCACTTGCGGCGGAGATAACACCAATAAACCGGACTTCCGAGAACTTGATTTGGGTTCGCCCATTTCGCCTTTACGAGATGGACCGGCGATTAGTAGCAGCTCTAGCTCATCCGGGTCGGTTTCTGGTCGGACTGGAAATGGACTCCAGGTTGGGTCCGGTACTAGAAAGTCAGACTCCGGTGGGACTCC...

Protein

Download Protein FASTA

701 aa · TkA04G344010|TK1151|PROTEIN

MSHSRKPDSGLGFDTLSDRLRKTVTCGGDNTNKPDFRELDLGSPISPLRDGPAISSSSSSSGSVSGRTGNGLQVGSGTRKSDSGGTPNNHSGELSVDSSPTFSAGGSRGLKSGHTRSDSGSVSGGHPSIFTGGSSATSPPVNVLPTGNICPSGRVLKTGMMSTRTSKPDVLSLGTGNYGHGSIMRGGSSSGSGSSPTIKSSASAGKPETPVSGGSNSPYSRRSSMDPEDLKKLGNEEYKKGHFLEALSFYDRAISQSPAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G344010
TK1151 IDTkA04G344010
OH-1004 IDLXL04_037739
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G344010
LocationChr04:86953884-86958718 (+)
DescriptionSimilar to TTL1: TPR repeat-containing thioredoxin TTL1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g53300 Involved in responses to osmotic stress and abscisic acid (ABA).
The Arabidopsis tetratricopeptide repeat-containing protein TTL1 is required for osmotic stress responses and abscisic acid sensitivity.2006 · DOI: 10.1104/pp.106.085191
The Arabidopsis tetratricopeptide thioredoxin-like gene family is required for osmotic stress tolerance and male sporogenesis.2012 · DOI: 10.1104/pp.111.188920
At3g58620 Involved in osmotic and salt stress tolerance.
The Arabidopsis tetratricopeptide thioredoxin-like gene family is required for osmotic stress tolerance and male sporogenesis.2012 · DOI: 10.1104/pp.111.188920
At2g42580 Involved in osmotic and salt stress tolerance. No verified direct reference in this release
At3g14950 Plays a role in the transmission of male gametophyte.
The Arabidopsis tetratricopeptide thioredoxin-like gene family is required for osmotic stress tolerance and male sporogenesis.2012 · DOI: 10.1104/pp.111.188920

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037739 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006950 response to stress Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009555 pollen development Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009733 response to auxin Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G53300
ath:AT2G42580
ath:AT3G14950
ath:AT3G58620
ddi:DDB_G0288639
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.552
Rank 1 · TkA04G344010 · TK1151
Nucleus0.343
Rank 2 · TkA04G344010 · TK1151
Cell membrane0.086
Rank 3 · TkA04G344010 · TK1151
Golgi apparatus0.073
Rank 4 · TkA04G344010 · TK1151
Peroxisome0.066
Rank 5 · TkA04G344010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29407CFAP70_TPR_C223-264 aa
PF13371TPR_9226-261 aa
PF07719TPR_2228-260 aa
PF13428TPR_14228-269 aa
PF25575TPR_BSK1_C229-296 aa
PF00515TPR_1230-259 aa
PF29386CFAP70_mid_TPR230-316 aa
PF25068ARM_TT21_4th231-288 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G344010PF29407CFAP70_TPR_C2232640.311.3
TkA04G344010PF13371TPR_92262616.4e-0626.8
TkA04G344010PF07719TPR_22282603e-2896.2
TkA04G344010PF13428TPR_142282695.6e-1245.8
TkA04G344010PF25575TPR_BSK1_C2292966.4e-0730.0
TkA04G344010PF00515TPR_12302597.1e-2689.6
TkA04G344010PF29386CFAP70_mid_TPR2303160.001719.3
TkA04G344010PF25068ARM_TT21_4th2312885.4e-0524.2
TkA04G344010PF03704BTAD2312830.2412.4
TkA04G344010PF13432TPR_162322936.9e-1246.3
TkA04G344010PF13424TPR_122322545.7e-0523.9
TkA04G344010PF13181TPR_82332601.1e-0835.3
TkA04G344010PF21033RMD1-32332720.006916.3
TkA04G344010PF13374TPR_102332540.09813.4
TkA04G344010PF13414TPR_112342711.5e-1970.1
TkA04G344010PF14559TPR_192402862e-1660.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9MAH1Arabidopsis thalianasp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL153.200%Swiss-ProtHigh
Q84JR9Arabidopsis thalianasp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL444.600%Swiss-ProtMedium
Q9SIN1Arabidopsis thalianasp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL343.200%Swiss-ProtMedium
F4IXE4Arabidopsis thalianasp|F4IXE4|TTL2_ARATH TPR repeat-containing thioredoxin TTL245.100%Swiss-ProtMedium

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