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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G314220
Reference: TK1151 Chr: Chr04 Coordinates: 79150088-79152319 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1359 bp · TkA04G314220|TK1151|cDNA

CCCTCACGTGCCCCCCGAGATATTTCAGTAGCTTTCTATCGCTATATAACAACACACTTCACTCACCTTCTTCATACAAACCAACCTTCAATCTCCTTAATCTCTTCAACAATGGCGTCAATGGCTACAACCTTTGCTTCTTCTCTCTCCACCAAGGTTAGAACCTCTTTCCTAGATCAATCATCCTTCCATGGCGTTCCGGTGGCTTCTCCGACCAGAATCCAACCAGTCAAATGCAAAAACACGCCGATCACCATGTC...

CDS

Download CDS FASTA

1170 bp · TkA04G314220|TK1151|CDS

CCCTCACGTGCCCCCCGAGATATTTCAGTAGCTTTCTATCGCTATATAACAACACACTTCACTCACCTTCTTCATACAAACCAACCTTCAATCTCCTTAATCTCTTCAACAATGGCGTCAATGGCTACAACCTTTGCTTCTTCTCTCTCCACCAAGGTTAGAACCTCTTTCCTAGATCAATCATCCTTCCATGGCGTTCCGGTGGCTTCTCCGACCAGAATCCAACCAGTCAAATGCAAAAACACGCCGATCACCATGTC...

Protein

Download Protein FASTA

389 aa · TkA04G314220|TK1151|PROTEIN

PSRAPRDISVAFYRYITTHFTHLLHTNQPSISLISSTMASMATTFASSLSTKVRTSFLDQSSFHGVPVASPTRIQPVKCKNTPITMSATPYDLGSFTFSPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELEIEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIKGDRVSGVVTNWALVTMNHDTQSCMDPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G314220
TK1151 IDTkA04G314220
OH-1004 IDLXL04_030955
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)82.500
Protein coverage (%)TK1151 97.172 / OH-1004 88.453
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G314220
LocationChr04:79150088-79152319 (-)
DescriptionSimilar to THI1-1: Thiamine thiazole synthase 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g54770 Involved in biosynthesis of the thiamine precursor thiazole.
Point mutation is responsible for Arabidopsis tz-201 mutant phenotype affecting thiamin biosynthesis.2003 · DOI: 10.1093/pcp/pcg104
THI1, a protein involved in the biosynthesis of thiamin in Arabidopsis thaliana: structural analysis of THI1(A140V) mutant.2014 · DOI: 10.1016/j.bbapap.2014.03.005
THI1, a Thiamine Thiazole Synthase, Interacts with Ca2+-Dependent Protein Kinase CPK33 and Modulates the S-Type Anion Channels and Stomatal Closure in Arabidopsis.2016 · DOI: 10.1104/pp.15.01649
Thi1, a thiamine biosynthetic gene in Arabidopsis thaliana, complements bacterial defects in DNA repair.1996 · DOI: 10.1007/bf00042231

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030955 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006974 DNA damage response Biological Process
GO:0009228 thiamine biosynthetic process Biological Process
GO:0009409 response to cold Biological Process
GO:0052837 thiazole biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009579 thylakoid Cellular Component
GO:0009941 chloroplast envelope Cellular Component
KEGG gene cross-reference
ath:AT5G54770
cit:102626594
vvi:100260728
vvi:100265774
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.955
Rank 1 · TkA04G314220 · TK1151
Mitochondrion0.069
Rank 2 · TkA04G314220 · TK1151
Cytoplasm0.027
Rank 3 · TkA04G314220 · TK1151
Nucleus0.022
Rank 4 · TkA04G314220 · TK1151
Cell membrane0.013
Rank 5 · TkA04G314220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03486HI0933_like10-77 aa
PF27806HxsD10-60 aa
PF13454NAD_binding_9104-120 aa
PF01946Thi4107-340 aa
PF01494FAD_binding_3123-155 aa
PF00890FAD_binding_2125-161 aa
PF01266DAO125-170 aa
PF07992Pyr_redox_2125-200 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G314220PF03486HI0933_like10770.0003720.8
TkA04G314220PF27806HxsD10600.1612.7
TkA04G314220PF13454NAD_binding_91041200.0009719.9
TkA04G314220PF01946Thi41073401.5e-113378.6
TkA04G314220PF01494FAD_binding_31231550.009815.9
TkA04G314220PF00890FAD_binding_21251612.5e-0937.6
TkA04G314220PF01266DAO1251707.4e-0936.3
TkA04G314220PF07992Pyr_redox_21252003.2e-0627.5
TkA04G314220PF12831FAD_oxidored1252428.1e-0522.8
TkA04G314220PF01134GIDA1251560.0002121.2
TkA04G314220PF05834Lycopene_cycl1251590.0002321.1
TkA04G314220PF03486HI0933_like1251600.0003720.8
TkA04G314220PF21799MurD-like_N1251640.07614.0
TkA04G314220PF00070Pyr_redox1261560.5211.6
TkA04G314220PF13454NAD_binding_91271680.0009719.9
TkA04G314220PF13738Pyr_redox_31271560.002617.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38814Arabidopsis thalianasp|Q38814|THI4_ARATH Thiamine thiazole synthase, chloroplastic77.600%Swiss-ProtHigh

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