TkA04G307610 | RubberDandelionOmics

Gene overview

TkA04G307610

Reference: TK1151 Chr: Chr04 Coordinates: 77610793-77617788 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

665 bp · TkA04G307610|TK1151|cDNA

TCTTGATGAGGATGGTGGTCCCTATGAGTCAAGTGATTAAAAATAAAAAGAAAATCGGCGAAGAAAACGTACGAAAAGCTGTTGAAACCGTCACTAAAGCAGCAGAAGTTGCTTTGTCTGAAGGAAAAGCTTTCTGCATTTCACACGTCTGTGTGGGTTCAGACACTGCTGCTATTCGTGAAGCAGTTGTGAAAACCATGGAGCAAAAGGGAATGGCGGTGATGGTATTCAGCACTGATGAACAATCAAAAAAGACTCTA...

CDS

Download CDS FASTA

3066 bp · TkA04G307610|TK1151|CDS

ATGAGGTTTCACCTCTCTCGTAATTTGAATCTAGCGTTTGATTACCGTCGTGTCGTCGCTTGTTCAGCTGCATCTACTTTATCACTCCGGGCGGCGGCGGCGGATTATTCTATTCGTAGGAAGGATTACATATCTGCTTTAGGCAGTTTTAATTTGTCGACTGTTGCTTCGGTGCGAGACTCTTCCTGTACGAAGACCATGGGCTCGCAATCGGCAGCGGAGGTGGAGTGGCCAGCCAACAAAGTTAGAGATACTTTCAT...

Protein

Download Protein FASTA

1021 aa · TkA04G307610|TK1151|PROTEIN

MRFHLSRNLNLAFDYRRVVACSAASTLSLRAAAADYSIRRKDYISALGSFNLSTVASVRDSSCTKTMGSQSAAEVEWPANKVRDTFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTTVFKLPTDRIYATYFGGDEKLGLPADTEAREIWLKYLPPARVLPFGCKDNFWEMGDTGPCGPCTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G307610`
TK1151 ID	TkA04G307610
OH-1004 ID	LXL04_037429
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 99.609 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G307610

Location Chr04:77610793-77617788 (-)

Description Similar to ALATS: Alanine--tRNA ligase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g50200`	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037429 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006400 tRNA modification Biological Process

GO:0006418 tRNA aminoacylation for protein translation Biological Process

GO:0006419 alanyl-tRNA aminoacylation Biological Process

GO:0008033 tRNA processing Biological Process

GO:0035332 positive regulation of hippo signaling Biological Process

GO:0070143 mitochondrial alanyl-tRNA aminoacylation Biological Process

GO:0140018 regulation of cytoplasmic translational fidelity Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G50200

cal:CAALFM_C603720WA

ddi:DDB_G0277823

hsa:16

sce:YOR335C

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.472

Rank 1 · TkA04G307610 · TK1151

Cytoplasm0.258

Rank 2 · TkA04G307610 · TK1151

Plastid0.221

Rank 3 · TkA04G307610 · TK1151

Peroxisome0.121

Rank 4 · TkA04G307610 · TK1151

Nucleus0.069

Rank 5 · TkA04G307610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01411tRNA-synt_2c81-656 aa

PF21770MgtC_SapB_C436-449 aa

PF07973tRNA_SAD679-684 aa

PF07973tRNA_SAD754-812 aa

PF26023ALA1820-882 aa

PF21770MgtC_SapB_C915-970 aa

PF02272DHHA1920-1016 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G307610	`PF01411`	tRNA-synt_2c	81	656	1.4e-215	717.8
TkA04G307610	`PF21770`	MgtC_SapB_C	436	449	0.28	12.5
TkA04G307610	`PF07973`	tRNA_SAD	679	684	1.2e-13	51.5
TkA04G307610	`PF07973`	tRNA_SAD	754	812	1.2e-13	51.5
TkA04G307610	`PF26023`	ALA1	820	882	3.4e-06	28.1
TkA04G307610	`PF21770`	MgtC_SapB_C	915	970	0.28	12.5
TkA04G307610	`PF02272`	DHHA1	920	1016	1.3e-12	48.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P36428`	Arabidopsis thaliana	sp\|P36428\|SYA_ARATH Alanine--tRNA ligase	72.300%	Swiss-Prot	High

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