RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G273740
Reference: TK1151 Chr: Chr04 Coordinates: 69143047-69146061 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1248 bp · TkA04G273740|TK1151|cDNA

ATGATGAAGGGAAGAAATTCACAAAAAGGAAACGGTACCATTTTCCTAGCTGGCCCACCACTCGTGAAGGATACTCAAAATCCCTTGTATTTGCACAGGGATGCACACAAAAGCCCCTCTTATTGGTCGAGTGTTTGCTTGCATAATATGGCCAATTTGGCAAAGGAGGCAACAACTATTAGACTTGTACTTGAACCTCTTTTTCACAGTTTTGACACTGAAAAACATTGGTTCCCTAAAAAAGGTCTAGCCTTTTCTAT...

CDS

Download CDS FASTA

1248 bp · TkA04G273740|TK1151|CDS

ATGATGAAGGGAAGAAATTCACAAAAAGGAAACGGTACCATTTTCCTAGCTGGCCCACCACTCGTGAAGGATACTCAAAATCCCTTGTATTTGCACAGGGATGCACACAAAAGCCCCTCTTATTGGTCGAGTGTTTGCTTGCATAATATGGCCAATTTGGCAAAGGAGGCAACAACTATTAGACTTGTACTTGAACCTCTTTTTCACAGTTTTGACACTGAAAAACATTGGTTCCCTAAAAAAGGTCTAGCCTTTTCTAT...

Protein

Download Protein FASTA

415 aa · TkA04G273740|TK1151|PROTEIN

MMKGRNSQKGNGTIFLAGPPLVKDTQNPLYLHRDAHKSPSYWSSVCLHNMANLAKEATTIRLVLEPLFHSFDTEKHWFPKKGLAFSILKYLQMVLEESDDKSHLLLSILIKHLELSQCVKQQASIPIVGAISDLIKHLRKCLQSLSEPSSPRVGPISCYMDLQSALEKCISSLLHKLSKMESSCGVRNSFSRDSSTPFEELQLYLQKQLQENLVNFEHLTKKATDAQFEKDKLLLKLESACDGKPWNETDSDSNKDVSLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G273740
TK1151 IDTkA04G273740
OH-1004 IDLXL04_034938
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 98.109
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G273740
LocationChr04:69143047-69146061 (+)
DescriptionSimilar to KIN4C: Kinesin-like protein KIN-4C
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g60930 Kinesin-like motor protein involved in the control of the oriented deposition of cellulose microfibrils. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0308200 Functions in regulating leaf rolling through abaxial side leaf cell differentiation.
Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.2016 · DOI: 10.1093/jxb/erw029
UniProt: B9F2Y7 Microtubule-dependent motor protein involved in the control of the oriented deposition of cellulose microfibrils. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034938 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007018 microtubule-based movement Biological Process
GO:0007052 mitotic spindle organization Biological Process
GO:0030154 cell differentiation Biological Process
GO:0051231 spindle elongation Biological Process
GO:0071555 cell wall organization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005874 microtubule Cellular Component
GO:0005875 microtubule associated complex Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009524 phragmoplast Cellular Component
GO:0055028 cortical microtubule Cellular Component
KEGG gene cross-reference
ath:AT5G60930
dosa:Os02g0742800
dosa:Os02g0742900
dosa:Os03g0308200
osa:4332616
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.469
Rank 1 · TkA04G273740 · TK1151
Cytoplasm0.392
Rank 2 · TkA04G273740 · TK1151
Cell membrane0.128
Rank 3 · TkA04G273740 · TK1151
Endoplasmic reticulum0.080
Rank 4 · TkA04G273740 · TK1151
Golgi apparatus0.060
Rank 5 · TkA04G273740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21052EFR3_ARM25-139 aa
PF22675KH-I_KHDC4-BBP96-107 aa
PF14493HTH_40115-133 aa
PF14674FANCI_S1-cap133-147 aa
PF00013KH_1178-193 aa
PF14674FANCI_S1-cap189-216 aa
PF25078DUF7801191-233 aa
PF22675KH-I_KHDC4-BBP198-213 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G273740PF21052EFR3_ARM251395.2e-1452.6
TkA04G273740PF22675KH-I_KHDC4-BBP961070.511.0
TkA04G273740PF14493HTH_401151330.01516.3
TkA04G273740PF14674FANCI_S1-cap1331470.06713.8
TkA04G273740PF00013KH_11781931.5e-0525.4
TkA04G273740PF14674FANCI_S1-cap1892160.06713.8
TkA04G273740PF25078DUF78011912330.1513.0
TkA04G273740PF22675KH-I_KHDC4-BBP1982130.511.0
TkA04G273740PF25764KIF21A_4th2152820.01815.4
TkA04G273740PF00171Aldedh2212810.3810.0
TkA04G273740PF25078DUF78012642880.1513.0
TkA04G273740PF13083KH_KhpA-B3283470.212.3
TkA04G273740PF07650KH_23313580.02615.0
TkA04G273740PF00013KH_13333601.5e-0525.4
TkA04G273740PF22675KH-I_KHDC4-BBP3343590.511.0
TkA04G273740PF14493HTH_403383970.01516.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4K0J3Arabidopsis thalianasp|F4K0J3|KN4C_ARATH Kinesin-like protein KIN-4C37.800%Swiss-ProtLow
Q10MI0Oryza sativa subsp. japonicasp|Q10MI0|SRL2_ORYSJ Protein SEMI-ROLLED LEAF 227.200%Swiss-ProtLow
B9F2Y7Oryza sativa subsp. japonicasp|B9F2Y7|KN4C_ORYSJ Kinesin-like protein KIN-4C39.500%Swiss-ProtLow

JBrowse

View in Genome Browser