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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G189220
Reference: TK1151 Chr: Chr04 Coordinates: 48800018-48805082 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2498 bp · TkA04G189220|TK1151|cDNA

TACTTCTTCGCTTCAAGACGGCGTCGCACGTCACCCCAAGGGCCCAACGACCCACCACTCCTAGTAATAAAACCCCATCTAAATCCTCTTCCTGCATCTATACTCCCAATTTTGTTAAAAACGGAAGTTTTTTCTACTACACTACTCAGGATGGGAGGAACATCAACGATCTCTGTTGGCTCCGATGGGGTGGCTATCATCACCATCATCAACCCACCTGTTAATTCACTTTCTCTCGATGTACTCAATAGCTTAAAAGA...

CDS

Download CDS FASTA

2328 bp · TkA04G189220|TK1151|CDS

TACTTCTTCGCTTCAAGACGGCGTCGCACGTCACCCCAAGGGCCCAACGACCCACCACTCCTAGTAATAAAACCCCATCTAAATCCTCTTCCTGCATCTATACTCCCAATTTTGTTAAAAACGGAAGTTTTTTCTACTACACTACTCAGGATGGGAGGAACATCAACGATCTCTGTTGGCTCCGATGGGGTGGCTATCATCACCATCATCAACCCACCTGTTAATTCACTTTCTCTCGATGTACTCAATAGCTTAAAAGA...

Protein

Download Protein FASTA

775 aa · TkA04G189220|TK1151|PROTEIN

YFFASRRRRTSPQGPNDPPLLVIKPHLNPLPASILPILLKTEVFSTTLLRMGGTSTISVGSDGVAIITIINPPVNSLSLDVLNSLKDSFDQALQRDDVKAIVVTGAKGKFSGGFDISAFGGMHEGKAMSTGPSSKPGYVSIDILSDTLEAARKPSVAAIDGLALGGGLEIAMACHARIATSTAQLGLPELQLGVIPGFGGTQRLPRLVGLAKALEMMLTSKPVRGLEAHTLGLVDEIVPGDQLLQTARKYALDILERRKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G189220
TK1151 IDTkA04G189220
OH-1004 IDLXL04_029884
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)92.400
Protein coverage (%)TK1151 95.226 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G189220
LocationChr04:48800018-48805082 (-)
DescriptionSimilar to Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g06860 Involved in peroxisomal fatty acid beta-oxidation during seed germination.
The Arabidopsis thaliana multifunctional protein gene (MFP2) of peroxisomal beta-oxidation is essential for seedling establishment.2006 · DOI: 10.1111/j.1365-313x.2005.02650.x
The multifunctional protein in peroxisomal beta-oxidation: structure and substrate specificity of the Arabidopsis thaliana protein MFP2.2010 · DOI: 10.1074/jbc.m110.106005
Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis .2019 · DOI: 10.1073/pnas.1904143116
At4g29010 Involved in peroxisomal fatty acid beta-oxidation.
A defect in beta-oxidation causes abnormal inflorescence development in Arabidopsis.1999 · DOI: 10.1105/tpc.11.10.1911
Jasmonate biosynthesis in Arabidopsis thaliana requires peroxisomal beta-oxidation enzymes--additional proof by properties of pex6 and aim1.2007 · DOI: 10.1016/j.phytochem.2007.04.024
The multifunctional protein in peroxisomal beta-oxidation: structure and substrate specificity of the Arabidopsis thaliana protein MFP2.2010 · DOI: 10.1074/jbc.m110.106005

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0274100 Multifunctional enzyme involved in fatty acid beta-oxidation. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029884 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006635 fatty acid beta-oxidation Biological Process
GO:0009695 jasmonic acid biosynthetic process Biological Process
GO:0009845 seed germination Biological Process
GO:0009908 flower development Biological Process
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005874 microtubule Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT3G06860
ath:AT4G29010
bna:106389027
csv:101210295
dosa:Os02g0274100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.527
Rank 1 · TkA04G189220 · TK1151
Mitochondrion0.208
Rank 2 · TkA04G189220 · TK1151
Cytoplasm0.207
Rank 3 · TkA04G189220 · TK1151
Plastid0.097
Rank 4 · TkA04G189220 · TK1151
Nucleus0.058
Rank 5 · TkA04G189220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00378ECH_162-264 aa
PF16113ECH_274-245 aa
PF01343Peptidase_S49150-186 aa
PF01343Peptidase_S49224-249 aa
PF07992Pyr_redox_2359-400 aa
PF027373HCDH_N364-542 aa
PF07992Pyr_redox_2364-492 aa
PF03807F420_oxidored364-394 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G189220PF00378ECH_1622648.3e-42144.0
TkA04G189220PF16113ECH_2742455e-2589.4
TkA04G189220PF01343Peptidase_S491501860.09413.4
TkA04G189220PF01343Peptidase_S492242490.09413.4
TkA04G189220PF07992Pyr_redox_23594000.006316.7
TkA04G189220PF027373HCDH_N3645421.6e-61208.1
TkA04G189220PF07992Pyr_redox_23644920.006316.7
TkA04G189220PF03807F420_oxidored3643940.01716.4
TkA04G189220PF01266DAO3643920.02115.1
TkA04G189220PF03446NAD_binding_23643980.212.4
TkA04G189220PF16113ECH_23653785e-2589.4
TkA04G189220PF14838INTS5_C3864660.211.0
TkA04G189220PF007253HCDH5456383.5e-2795.5
TkA04G189220PF07992Pyr_redox_26476660.006316.7
TkA04G189220PF007253HCDH6807583.5e-2795.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZPI5Arabidopsis thalianasp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP274.500%Swiss-ProtHigh
Q9ZPI6Arabidopsis thalianasp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM158.200%Swiss-ProtHigh
Q8W1L6Oryza sativa subsp. japonicasp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein57.400%Swiss-ProtHigh

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