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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G188160
Reference: TK1151 Chr: Chr04 Coordinates: 48482907-48487684 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4089 bp · TkA04G188160|TK1151|cDNA

CCATTTTTCGTAGGGAGAGACAGCCCCATTGTCGGCGACCATGGAAGAAGCCATATACCAGATAGTTACAGAGCTTGAAACACACCACAACGACTCACATTCACATACTCCCATCACCGAATCAACCCTATTAGCTCTTCAAACCCTCTTAGACTACACACTCGACAAAGATGATCCAATCGAAATTGAAAATCTCTCCGACGAACTCTCCTCCAAGAACCTCTCTCTCGCCTCCTCCCTCCTCCACCCTCTCACCTCCT...

CDS

Download CDS FASTA

3915 bp · TkA04G188160|TK1151|CDS

ATGGAAGAAGCCATATACCAGATAGTTACAGAGCTTGAAACACACCACAACGACTCACATTCACATACTCCCATCACCGAATCAACCCTATTAGCTCTTCAAACCCTCTTAGACTACACACTCGACAAAGATGATCCAATCGAAATTGAAAATCTCTCCGACGAACTCTCCTCCAAGAACCTCTCTCTCGCCTCCTCCCTCCTCCACCCTCTCACCTCCTCAATGGAATCCGGCGTACCCCATCGCTCTCTTCTCGCTTC...

Protein

Download Protein FASTA

1304 aa · TkA04G188160|TK1151|PROTEIN

MEEAIYQIVTELETHHNDSHSHTPITESTLLALQTLLDYTLDKDDPIEIENLSDELSSKNLSLASSLLHPLTSSMESGVPHRSLLASKVYLSLLLTPNFPVLSLFTPMAFLSLLRTVRRSFKNPQSGPPSGNQGKKKRGGRGGGRSKNTSKNVEEEGEEEREPVREFDVRALFPVLERLHLVLGLIHLGRFPDSLKGLVQTVAEIPVTALESCKNSANYTKLCNLCSQILSELLKSEHGDKSITAAEVLKSLSSSIILSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G188160
TK1151 IDTkA04G188160
OH-1004 IDLXL04_029896
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G188160
LocationChr04:48482907-48487684 (+)
DescriptionSimilar to NCAPD3: Condensin-2 complex subunit D3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g15890 Regulatory subunit of the condensin-2 complex, a complex which establishes mitotic chromosome architecture and is involved in physical rigidity of the chromatid axis (By similarity).
The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility.2013 · DOI: 10.1007/s00412-013-0424-y
The condensin complexes play distinct roles to ensure normal chromosome morphogenesis during meiotic division in Arabidopsis.2014 · DOI: 10.1111/tpj.12628
The PHD Finger Protein MMD1/DUET Ensures the Progression of Male Meiotic Chromosome Condensation and Directly Regulates the Expression of the Condensin Gene CAP-D3.2016 · DOI: 10.1105/tpc.16.00040

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029896 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0000278 mitotic cell cycle Biological Process
GO:0006325 chromatin organization Biological Process
GO:0007062 sister chromatid cohesion Biological Process
GO:0007076 mitotic chromosome condensation Biological Process
GO:0009556 microsporogenesis Biological Process
GO:0010032 meiotic chromosome condensation Biological Process
GO:0030261 chromosome condensation Biological Process
GO:0045132 meiotic chromosome segregation Biological Process
GO:0051301 cell division Biological Process
GO:0051307 meiotic chromosome separation Biological Process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore Biological Process
KEGG gene cross-reference
ath:AT4G15890
cel:CELE_Y110A7A.1
hsa:23310
mmu:78658
xla:398742
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.919
Rank 1 · TkA04G188160 · TK1151
Cytoplasm0.146
Rank 2 · TkA04G188160 · TK1151
Cell membrane0.025
Rank 3 · TkA04G188160 · TK1151
Mitochondrion0.014
Rank 4 · TkA04G188160 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkA04G188160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25786HEAT_GCN1_C6-45 aa
PF26777NCAPD3_N82-163 aa
PF12717Cnd1200-262 aa
PF24571HEAT_SCC3-SA222-263 aa
PF25786HEAT_GCN1_C225-291 aa
PF02985HEAT230-254 aa
PF12719Cnd3230-248 aa
PF13646HEAT_2230-250 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G188160PF25786HEAT_GCN1_C6450.006617.2
TkA04G188160PF26777NCAPD3_N821630.02814.9
TkA04G188160PF12717Cnd12002627.5e-2588.6
TkA04G188160PF24571HEAT_SCC3-SA2222636.07.4
TkA04G188160PF25786HEAT_GCN1_C2252910.006617.2
TkA04G188160PF02985HEAT2302542.7e-0730.9
TkA04G188160PF12719Cnd32302480.001119.0
TkA04G188160PF13646HEAT_22302500.001319.7
TkA04G188160PF21989RA_22383020.01815.8
TkA04G188160PF13513HEAT_EZ3423611.510.1
TkA04G188160PF25786HEAT_GCN1_C3764030.006617.2
TkA04G188160PF23325TPR_283784050.2112.2
TkA04G188160PF12717Cnd13794127.5e-2588.6
TkA04G188160PF02985HEAT3794062.7e-0730.9
TkA04G188160PF13513HEAT_EZ3793981.510.1
TkA04G188160PF13646HEAT_23804220.001319.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O24610Arabidopsis thalianasp|O24610|CNDD3_ARATH Condensin-2 complex subunit CAP-D357.800%Swiss-ProtHigh

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