TkA04G131930 | RubberDandelionOmics

Gene overview

TkA04G131930

Reference: TK1151 Chr: Chr04 Coordinates: 34337697-34341614 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2284 bp · TkA04G131930|TK1151|cDNA

AGGAATCATACCAAATAATATTAATGTTATTAATTCAGATATGAGTCGTTGGGGGGTCTGGATCAGAGATCTGAAAGTCAGAGATACTCTTCCCCCTGTCATCCCTCCCTTTCATAATGCTCCCCCACCACTCACCTCCGATCACCATCCCCTTCCTCCTCCATTCCCATCTCTCTGCTTAATCTTCCACCTCCCATGTCCATAACTCTCAGGCGCCGCTCATAAACATCCTTAAACTCCCGACACAAAAATGACAGCCA...

CDS

Download CDS FASTA

1758 bp · TkA04G131930|TK1151|CDS

ATGACAGCCAATCTAGGATCCATGTCGCGCAATTTTACAGACAAAAGCAAAGAAAGGTTGCTGCCTCGAAAGGGATACTCGGAATTAGGTTTTTTTAATGAATCCTATAGCACCATCAACAGCGAAGATGCTTCACTTTTCAGTAAAATCAAGGAATGGTGGAACGATGTTCGACTGTTCCTTGTTAAAGCTTACGAGATGGGCCGATCCGATCCCAGACAGTTCATCTTTGCTGCTAAATCGGGGTTGGCACTTGCTAT...

Protein

Download Protein FASTA

585 aa · TkA04G131930|TK1151|PROTEIN

MTANLGSMSRNFTDKSKERLLPRKGYSELGFFNESYSTINSEDASLFSKIKEWWNDVRLFLVKAYEMGRSDPRQFIFAAKSGLALAIVSVLIFFKEPFNFITQYSIWAILTVIVVFEFSIGATLSKGFNRALGTFSAGVLALAIAQLSVWAGEWQEIVIVVSIFVAGSISSYVKLYPSMKPYEYGFRVFMLTFCIVLVSGTSHFVQTAVSRLLLIGVGAGVCLIVNICVYPIWAGEDLHKLVVKNFRGVATSLEGCVNNY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G131930`
TK1151 ID	TkA04G131930
OH-1004 ID	LXL04_035423
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G131930

Location Chr04:34337697-34341614 (+)

Description Similar to ALMT9: Aluminum-activated malate transporter 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g25480`	Malate transporter.	No verified direct reference in this release
`At3g18440`	Vacuolar malate channel.	The Arabidopsis vacuolar malate channel is a member of the ALMT family.2007 · DOI: 10.1111/j.1365-313x.2007.03367.x
`At1g68600`	Malate transporter.	No verified direct reference in this release
`At2g17470`	Malate transporter.	No verified direct reference in this release
`At1g18420`	Malate transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035423 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015743 malate transport Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0034220 monoatomic ion transmembrane transport Biological Process

GO:0071423 malate transmembrane transport Biological Process

GO:0090332 stomatal closure Biological Process

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

KEGG gene cross-reference

ath:AT1G18420

ath:AT1G25480

ath:AT1G68600

ath:AT2G17470

ath:AT3G18440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.677

Rank 1 · TkA04G131930 · TK1151

Lysosome / Vacuole0.117

Rank 2 · TkA04G131930 · TK1151

Endoplasmic reticulum0.113

Rank 3 · TkA04G131930 · TK1151

Cytoplasm0.070

Rank 4 · TkA04G131930 · TK1151

Golgi apparatus0.047

Rank 5 · TkA04G131930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10111Glyco_tranf_2_28-53 aa

PF28175T4SS_LegC2C742-59 aa

PF11744ALMT66-553 aa

PF08507COPI_assoc81-181 aa

PF13515FUSC_2100-225 aa

PF06081ArAE_1104-228 aa

PF04632FUSC107-258 aa

PF10111Glyco_tranf_2_2270-318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G131930	`PF10111`	Glyco_tranf_2_2	8	53	0.19	11.9
TkA04G131930	`PF28175`	T4SS_LegC2C7	42	59	0.17	11.5
TkA04G131930	`PF11744`	ALMT	66	553	9.6e-180	599.2
TkA04G131930	`PF08507`	COPI_assoc	81	181	0.14	12.9
TkA04G131930	`PF13515`	FUSC_2	100	225	6.1e-10	40.0
TkA04G131930	`PF06081`	ArAE_1	104	228	0.015	16.1
TkA04G131930	`PF04632`	FUSC	107	258	1.2e-06	28.1
TkA04G131930	`PF10111`	Glyco_tranf_2_2	270	318	0.19	11.9
TkA04G131930	`PF28175`	T4SS_LegC2C7	348	415	0.17	11.5
TkA04G131930	`PF01815`	Rop	380	410	0.23	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6L8`	Arabidopsis thaliana	sp\|Q9C6L8\|ALMT4_ARATH Aluminum-activated malate transporter 4	56.700%	Swiss-Prot	High
`Q9LS46`	Arabidopsis thaliana	sp\|Q9LS46\|ALMT9_ARATH Aluminum-activated malate transporter 9	52.600%	Swiss-Prot	High
`Q93Z29`	Arabidopsis thaliana	sp\|Q93Z29\|ALMT5_ARATH Aluminum-activated malate transporter 5	59.900%	Swiss-Prot	High
`Q9SHM1`	Arabidopsis thaliana	sp\|Q9SHM1\|ALMT6_ARATH Aluminum-activated malate transporter 6	54.100%	Swiss-Prot	High
`Q9LPQ8`	Arabidopsis thaliana	sp\|Q9LPQ8\|ALMT3_ARATH Putative aluminum-activated malate transporter 3	52.500%	Swiss-Prot	High

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