RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G124680
Reference: TK1151 Chr: Chr04 Coordinates: 32388796-32402896 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4991 bp · TkA04G124680|TK1151|cDNA

AAAATTCCGAGATCCCGTTTCTCCGAAAAACTCATATTTCAATTAATTGTACCTATCACTGTCGTCTTTCTGATCTTTCATCACAACTAAGGAACTGATTTTGCTGCTGCCAAATTTCTTGTTGAGTTTTGCTTTTCATGTTCCGTTGACCCTTACGAAGAACATTAAGTGTAAGAAATGACGCCTGTAGATATTGCTGTTTCTGTTTTGGCAAAGCTGCTTGAATATATTGCTCGTCCAATCGTACAGCCGTTTGATTA...

CDS

Download CDS FASTA

4359 bp · TkA04G124680|TK1151|CDS

ATGACGCCTGTAGATATTGCTGTTTCTGTTTTGGCAAAGCTGCTTGAATATATTGCTCGTCCAATCGTACAGCCGTTTGATTACATTTTTCACCATAATACCAACATTAATGGTTTAAGAAACCGGATGTTGTGTCTGGAAAATACTCGAACCGGGGTCCATCGTCAGGTGCATATAGCTGAAAGGAATGGAGACCTTGTTCTCCCAAACGTACAAGATTGGCTTGCCAAAGCAAATGGTTTAGCAACAGAATCTCAGAA...

Protein

Download Protein FASTA

1452 aa · TkA04G124680|TK1151|PROTEIN

MTPVDIAVSVLAKLLEYIARPIVQPFDYIFHHNTNINGLRNRMLCLENTRTGVHRQVHIAERNGDLVLPNVQDWLAKANGLATESQNFLSDEVDRNHRCLSGSCPDLKLIYKSSREAKKKRAAIDELVERGKFDYVSQPARRPPIWPSIAVAATTSLGDLDGFESRKSQLRSTMEALEDDNVNIIGVYGMGGIGKTTFVEEVARQADALQLFDEMVMMVVSHKPNLKKLQGDLAEMLELNLKEEGELLRTARLRERLNQV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G124680
TK1151 IDTkA04G124680
OH-1004 IDLXL04_035536
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G124680
LocationChr04:32388796-32402896 (+)
DescriptionSimilar to At4g27220: Probable disease resistance protein At4g27220
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27190 Disease resistance protein. No verified direct reference in this release
At4g27220 Probable disease resistance protein. No verified direct reference in this release
At5g05400 Potential disease resistance protein. No verified direct reference in this release
At1g15890 Probable disease resistance protein. No verified direct reference in this release
At1g12220 Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035536 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0012501 programmed cell death Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0000166 nucleotide binding Molecular Function
KEGG gene cross-reference
ath:AT1G12220
ath:AT4G26090
ath:AT4G27190
ath:AT4G27220
ath:AT5G05400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.492
Rank 1 · TkA04G124680 · TK1151
Cytoplasm0.319
Rank 2 · TkA04G124680 · TK1151
Nucleus0.220
Rank 3 · TkA04G124680 · TK1151
Endoplasmic reticulum0.103
Rank 4 · TkA04G124680 · TK1151
Lysosome / Vacuole0.034
Rank 5 · TkA04G124680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25201nSTAND674-114 aa
PF13985YbgS82-108 aa
PF01637ATPase_2165-273 aa
PF25201nSTAND6166-238 aa
PF13191AAA_16168-208 aa
PF05621TniB169-269 aa
PF00931NB-ARC170-331 aa
PF13401AAA_22183-269 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G124680PF25201nSTAND6741147.9e-0626.7
TkA04G124680PF13985YbgS821080.3711.7
TkA04G124680PF01637ATPase_21652730.001119.6
TkA04G124680PF25201nSTAND61662387.9e-0626.7
TkA04G124680PF13191AAA_161682080.001819.5
TkA04G124680PF05621TniB1692690.08513.0
TkA04G124680PF00931NB-ARC1703319.4e-33113.9
TkA04G124680PF13401AAA_221832692.3e-0525.4
TkA04G124680PF05729NACHT1862709e-0523.1
TkA04G124680PF23952LRR_EndoS2002610.0001822.4
TkA04G124680PF01637ATPase_23724150.001119.6
TkA04G124680PF05621TniB3874080.08513.0
TkA04G124680PF12799LRR_44024130.000222.2
TkA04G124680PF23247LRR_RPS25416671.6e-85285.7
TkA04G124680PF13855LRR_85606032.2e-0524.9
TkA04G124680PF25019LRR_R13L1-DRL215766203.1e-0627.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9T048Arabidopsis thalianasp|Q9T048|DRL27_ARATH Disease resistance protein At4g2719029.100%Swiss-ProtLow
O81825Arabidopsis thalianasp|O81825|DRL28_ARATH Probable disease resistance protein At4g2722029.400%Swiss-ProtLow
Q9FLB4Arabidopsis thalianasp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g0540026.900%Swiss-ProtLow
Q9LMP6Arabidopsis thalianasp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g1589025.700%Swiss-ProtLow
O64973Arabidopsis thalianasp|O64973|RPS5_ARATH Disease resistance protein RPS528.100%Swiss-ProtLow

JBrowse

View in Genome Browser