TkA04G122700 | RubberDandelionOmics

Gene overview

TkA04G122700

Reference: TK1151 Chr: Chr04 Coordinates: 31875535-31876435 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

651 bp · TkA04G122700|TK1151|cDNA

ATGTCTACCTTCACGTTTTCATGTGACCACTACTCACAAGACTTATCTCCTTACAAGCCATGGCATCCTCTATATAAGGAGCTCGGATTAAGCATAACTGATAGACAAACAAAGACTAAAATGGGTTCATCCGCCTATTGGCAAGTTATTGGAGAAGTTCTTGGAGACATGGACATGGCACAACACTTTGTACCTAGGGTTCCTATGTACATCTACTATGGAATTGGAAAGGTGATAAGTGGTTGTGAACTTAATGCATC...

CDS

Download CDS FASTA

651 bp · TkA04G122700|TK1151|CDS

ATGTCTACCTTCACGTTTTCATGTGACCACTACTCACAAGACTTATCTCCTTACAAGCCATGGCATCCTCTATATAAGGAGCTCGGATTAAGCATAACTGATAGACAAACAAAGACTAAAATGGGTTCATCCGCCTATTGGCAAGTTATTGGAGAAGTTCTTGGAGACATGGACATGGCACAACACTTTGTACCTAGGGTTCCTATGTACATCTACTATGGAATTGGAAAGGTGATAAGTGGTTGTGAACTTAATGCATC...

Protein

Download Protein FASTA

216 aa · TkA04G122700|TK1151|PROTEIN

MSTFTFSCDHYSQDLSPYKPWHPLYKELGLSITDRQTKTKMGSSAYWQVIGEVLGDMDMAQHFVPRVPMYIYYGIGKVISGCELNASDVKNVPRVYIGGESDEFYTLIMIDPDAPNPNEPCLKQVVSWIVTNIHGPTSYTQGTEVVPYEVSNPEVGIHRNIFALYQQQYHIDNVEPPASRVCFNIRDFAAQNNLGDPVRVTYFNMRRQSNKRKNRG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G122700`
TK1151 ID	TkA04G122700
OH-1004 ID	LXL04_035575
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G122700

Location Chr04:31875535-31876435 (-)

Description Similar to MFT: Protein MOTHER of FT and TFL1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g18100`	May form complexes with phosphorylated ligands by interfering with kinases and their effectors (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0157700`	Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering.	Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions.2002 · DOI: 10.1093/pcp/pcf156 Hd3a protein is a mobile flowering signal in rice.2007 · DOI: 10.1126/science.1141753 Hd3a and RFT1 are essential for flowering in rice.2008 · DOI: 10.1242/dev.008631 A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.2009 · DOI: 10.1242/dev.040170
`Os06g0157500`	Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering.	Hd3a and RFT1 are essential for flowering in rice.2008 · DOI: 10.1242/dev.008631 A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.2009 · DOI: 10.1242/dev.040170 OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDKγ4.2017 · DOI: 10.1105/tpc.16.00728

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035575 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009910 negative regulation of flower development Biological Process

GO:0010030 positive regulation of seed germination Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G18100

bdi:100838275

dosa:Os06g0498800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.513

Rank 1 · TkA04G122700 · TK1151

Nucleus0.435

Rank 2 · TkA04G122700 · TK1151

Extracellular0.087

Rank 3 · TkA04G122700 · TK1151

Mitochondrion0.086

Rank 4 · TkA04G122700 · TK1151

Cell membrane0.063

Rank 5 · TkA04G122700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01161PBP93-203 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G122700	`PF01161`	PBP	93	203	5.6e-10	40.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XFK7`	Arabidopsis thaliana	sp\|Q9XFK7\|MFT_ARATH Protein MOTHER of FT and TFL1	42.900%	Swiss-Prot	Medium
`Q93WI9`	Oryza sativa subsp. japonica	sp\|Q93WI9\|HD3A_ORYSJ Protein HEADING DATE 3A	44.400%	Swiss-Prot	Medium
`Q8VWH2`	Oryza sativa subsp. japonica	sp\|Q8VWH2\|RFT1_ORYSJ Protein RICE FLOWERING LOCUS T 1	43.200%	Swiss-Prot	Medium

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