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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G113010
Reference: TK1151 Chr: Chr04 Coordinates: 29345008-29354476 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

822 bp · TkA04G113010|TK1151|cDNA

TGATCCAATCTCCCTCCAATGTCGATAGCAGACGATAGATTCTGCAGTGATGGTTGATTTTTGAGAGAGAGAAGGGCAGAAACGCAGCAAAAATGTCATCTGCAACTTCCCTTCGCTCCCCTTTCCTCTCACCTCCTCTTTCCCCATCGAAGATTTCTTCGTCTTCGTCTCCTCATTTTCACCCGCTTTCCTTCAGATGCTCAAGAAATCAACGCTCCCCTGCTTCTTATCCTCACCTCATCAAAGCCGAGCTCGACACG...

CDS

Download CDS FASTA

2580 bp · TkA04G113010|TK1151|CDS

ATGTCATCTGCAACTTCCCTTCGCTCCCCTTTCCTCTCACCTCCTCTTTCCCCATCGAAGATTTCTTCGTCTTCGTCTCCTCATTTTCACCCGCTTTCCTTCAGATGCTCAAGAAATCAACGCTCCCCTGCTTCTTATCCTCACCTCATCAAAGCCGAGCTCGACACGAATACAGTGGTAGCAGTAGCAGTTGGGGTGGTGAGCGTCGCTTTTGGAATTGGTGTACCGATATTCTACGAATCGCAGATTGATAATGCGGC...

Protein

Download Protein FASTA

859 aa · TkA04G113010|TK1151|PROTEIN

MSSATSLRSPFLSPPLSPSKISSSSSPHFHPLSFRCSRNQRSPASYPHLIKAELDTNTVVAVAVGVVSVAFGIGVPIFYESQIDNAAKRDNTQPCFPCTGTGAQSCRFCTGSGNVTVELGGGEKEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRRMMTREWDRRFKSVFQRGKVYQLVSERVGAGRRWEKTRLQKQHKGRRPPKLDNVEEFVGILHDQMKKQTKKTQAQTDDIELLKTKMDTVINHQDEMRKNMSKLLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G113010
TK1151 IDTkA04G113010
OH-1004 IDLXL04_031674
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)56.700
Protein coverage (%)TK1151 61.118 / OH-1004 21.243
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G113010
LocationChr04:29345008-29354476 (+)
DescriptionSimilar to Tf2-6: Transposon Tf2-6 polyprotein (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g75690 Protein disulfide-isomerase probably involved upon formation of a complex with HHL1 in maintaining photosystem II (PSII) activity under high light by regulating repair and reassembly of PSII complexes.
A small zinc finger thylakoid protein plays a role in maintenance of photosystem II in Arabidopsis thaliana.2011 · DOI: 10.1105/tpc.111.085456
HYPERSENSITIVE TO HIGH LIGHT1 interacts with LOW QUANTUM YIELD OF PHOTOSYSTEM II1 and functions in protection of photosystem II from photodamage in Arabidopsis.2014 · DOI: 10.1105/tpc.113.122424

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031674 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0003887 DNA-directed DNA polymerase activity Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
spo:2538755
spo:2541833
spo:2541991
spo:2542672
spo:2542797
spo:2543673
spo:3361218
spo:3361422
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.650
Rank 1 · TkA04G113010 · TK1151
Mitochondrion0.315
Rank 2 · TkA04G113010 · TK1151
Cytoplasm0.077
Rank 3 · TkA04G113010 · TK1151
Nucleus0.056
Rank 4 · TkA04G113010 · TK1151
Peroxisome0.040
Rank 5 · TkA04G113010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21002TMEM106_N87-118 aa
PF28694SCO2_C88-102 aa
PF17302DUF535193-104 aa
PF25112zf-AtTam3793-117 aa
PF30758Orange_C95-148 aa
PF25436BSD2_CRD95-119 aa
PF00684DnaJ_CXXCXGXG95-147 aa
PF28694SCO2_C105-137 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G113010PF21002TMEM106_N871180.004718.2
TkA04G113010PF28694SCO2_C881020.0813.7
TkA04G113010PF17302DUF5351931041.9e-0835.2
TkA04G113010PF25112zf-AtTam37931170.1713.3
TkA04G113010PF30758Orange_C951480.000222.4
TkA04G113010PF25436BSD2_CRD951190.002318.8
TkA04G113010PF00684DnaJ_CXXCXGXG951470.8410.7
TkA04G113010PF28694SCO2_C1051370.0813.7
TkA04G113010PF17302DUF53511061371.9e-0835.2
TkA04G113010PF25436BSD2_CRD1291490.002318.8
TkA04G113010PF21002TMEM106_N1291560.004718.2
TkA04G113010PF25112zf-AtTam371291470.1713.3
TkA04G113010PF17302DUF53511361471.9e-0835.2
TkA04G113010PF28694SCO2_C1391490.0813.7
TkA04G113010PF03732PEG10_N-capsid3183822.2e-1144.7
TkA04G113010PF19259Ty3_capsid3424602.3e-0731.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GSJ6Arabidopsis thalianasp|Q8GSJ6|LQY1_ARATH Protein disulfide-isomerase LQY1, chloroplastic73.200%Swiss-ProtHigh

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