LXL04_031674 | RubberDandelionOmics

Gene overview

LXL04_031674

Reference: OH-1004 Chr: Chr07 Coordinates: 9450241-9461920 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7629 bp · LXL04_031674|LXL04_031674|OH1004|cDNA

ATGAAAGTGTTGGTGACTGGTGCTTCCGGTTACTTAGGTGGAAGACTCTGCCATGCGCTACTCCATCACGGCCACTCTGTTCGGGCGTTCGTCCGTCGTACCAGCGATCTCTCCTCCATTCCTACTCTGTCCGACGGCGTAGCTCTAGAACTTGCCTATGGTGACGTCACAGACTATCCGTCACTTCTCGCAGCTTGTTCCGGCTGCCAAGTGGTTTTCCACGCCGCTGCTCTAGTGGAACCATGGCTTCCAGATCCTTC...

CDS

Download CDS FASTA

7629 bp · LXL04_031674|LXL04_031674|OH1004|CDS

ATGAAAGTGTTGGTGACTGGTGCTTCCGGTTACTTAGGTGGAAGACTCTGCCATGCGCTACTCCATCACGGCCACTCTGTTCGGGCGTTCGTCCGTCGTACCAGCGATCTCTCCTCCATTCCTACTCTGTCCGACGGCGTAGCTCTAGAACTTGCCTATGGTGACGTCACAGACTATCCGTCACTTCTCGCAGCTTGTTCCGGCTGCCAAGTGGTTTTCCACGCCGCTGCTCTAGTGGAACCATGGCTTCCAGATCCTTC...

Protein

Download Protein FASTA

2542 aa · LXL04_031674|LXL04_031674|OH1004|PROTEIN

MKVLVTGASGYLGGRLCHALLHHGHSVRAFVRRTSDLSSIPTLSDGVALELAYGDVTDYPSLLAACSGCQVVFHAAALVEPWLPDPSKFLSVNVGGLKNVLRAYKETDVIEKIVYTSSFFALGSTDGYTADESQVHSAKFFCTEYEKSKAIADKIALEAAKEGVPIVPVYPGVIYGSGKVTAGNVVARLIVERFNGRLPGYIGQGTDKFSFSHVDDVVNGHISALDKGKPGERYLLTGENASFMQVFDMAATITNTKRPW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031674`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_031674`
Location	Chr07:9450241-9461920 (+)
Description	Similar to Tf2-6: Transposon Tf2-6 polyprotein (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_031674` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	spo:2538755 spo:2541833 spo:2541991 spo:2542672 spo:2542797 spo:2543673 spo:3361218 spo:3361422 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.555

Rank 1 · LXL04_031674 · OH-1004

Nucleus0.293

Rank 2 · LXL04_031674 · OH-1004

Mitochondrion0.119

Rank 3 · LXL04_031674 · OH-1004

Cell membrane0.069

Rank 4 · LXL04_031674 · OH-1004

Peroxisome0.065

Rank 5 · LXL04_031674 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368.20NmrA2-140 aa

PF01370.28Epimerase3-234 aa

PF02719.22Polysacc_synt_23-118 aa

PF01073.263Beta_HSD4-225 aa

PF16363.12GDP_Man_Dehyd4-254 aa

PF13460.13NAD_binding_107-128 aa

PF07993.19NAD_binding_466-219 aa

PF03732.25PEG10_N-capsid515-586 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031674	`PF05368.20`	NmrA	2	140	7.9e-11	42.8
LXL04_031674	`PF01370.28`	Epimerase	3	234	5.1e-29	102.1
LXL04_031674	`PF02719.22`	Polysacc_synt_2	3	118	4.6e-07	30.0
LXL04_031674	`PF01073.26`	3Beta_HSD	4	225	5.6e-20	72.2
LXL04_031674	`PF16363.12`	GDP_Man_Dehyd	4	254	3.6e-15	57.0
LXL04_031674	`PF13460.13`	NAD_binding_10	7	128	2.1e-11	44.7
LXL04_031674	`PF07993.19`	NAD_binding_4	66	219	7.3e-14	52.3
LXL04_031674	`PF03732.25`	PEG10_N-capsid	515	586	2.1e-21	76.8
LXL04_031674	`PF19259.5`	Ty3_capsid	549	674	3.2e-20	73.1
LXL04_031674	`PF30901.1`	PEG10-RTL1_C-capsid	600	666	4.7e-09	36.8
LXL04_031674	`PF08284.17`	RVP_2	767	861	1.5e-22	80.5
LXL04_031674	`PF13975.12`	gag-asp_proteas	770	859	4.6e-24	85.5
LXL04_031674	`PF13650.12`	Asp_protease_2	770	835	1.1e-19	71.7
LXL04_031674	`PF30863.1`	PRO_PEG10-RTL1	780	876	1.4e-15	58.4
LXL04_031674	`PF00078.33`	RVT_1	1011	1169	4.1e-41	141.8
LXL04_031674	`PF17919.8`	RT_RNaseH_2	1231	1325	3.3e-28	98.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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