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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G019760
Reference: TK1151 Chr: Chr04 Coordinates: 4941061-4941984 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

924 bp · TkA04G019760|TK1151|cDNA

ATGCTTAGGCTCTTCTCCTTCGATCCGATATCTTCTAAATGGATTACTGTCGATCCTCCACCACTGCCACCCTTTATCCACCGTGTTTCCCTACGTCATCCATCGTTCATATCCAGATATTTACCAGTTCAATCGCTCTCAGTCTCCGGCAAGCTCGTCCTCATCGCCGGAACCTCCGGAGACCTTCTCCCAGCCCTCACACATCCTCTCGTATTCGATCCAGTATCCAACGCTTGGTCTGCCGGCCCTCCAATCTCAAC...

CDS

Download CDS FASTA

924 bp · TkA04G019760|TK1151|CDS

ATGCTTAGGCTCTTCTCCTTCGATCCGATATCTTCTAAATGGATTACTGTCGATCCTCCACCACTGCCACCCTTTATCCACCGTGTTTCCCTACGTCATCCATCGTTCATATCCAGATATTTACCAGTTCAATCGCTCTCAGTCTCCGGCAAGCTCGTCCTCATCGCCGGAACCTCCGGAGACCTTCTCCCAGCCCTCACACATCCTCTCGTATTCGATCCAGTATCCAACGCTTGGTCTGCCGGCCCTCCAATCTCAAC...

Protein

Download Protein FASTA

307 aa · TkA04G019760|TK1151|PROTEIN

MLRLFSFDPISSKWITVDPPPLPPFIHRVSLRHPSFISRYLPVQSLSVSGKLVLIAGTSGDLLPALTHPLVFDPVSNAWSAGPPISTPRRWCAVGASRGTVVVASGIGSHYTQTVARSVEKWVLKKTESLHKKRIETDEVWEKMRSLRYSKLCREAIDAVGWRGKLCMVNVKGDCAKEGFVYDVDSDEWAAMAEGMLGGWRGPATAMDEETIYMVDQSRGVLRKYNEDRDDWSDIVTDERLKGAEYIVAGGGKVCVVCEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G019760
TK1151 IDTkA04G019760
OH-1004 IDLXL04_036870
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 77.136
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G019760
LocationChr04:4941061-4941984 (-)
DescriptionSimilar to SKIP25: F-box/kelch-repeat protein SKIP25
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31350 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036870 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009585 red, far-red light phototransduction Biological Process
GO:0010017 red or far-red light signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:2000762 regulation of phenylpropanoid metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G31350
ath:AT1G55270
ath:AT2G24540
ath:AT4G39590
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.853
Rank 1 · TkA04G019760 · TK1151
Cytoplasm0.189
Rank 2 · TkA04G019760 · TK1151
Cell membrane0.034
Rank 3 · TkA04G019760 · TK1151
Endoplasmic reticulum0.031
Rank 4 · TkA04G019760 · TK1151
Plastid0.018
Rank 5 · TkA04G019760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01344Kelch_15-19 aa
PF07646Kelch_27-21 aa
PF07893DUF166821-197 aa
PF07646Kelch_242-85 aa
PF13964Beta-prop_Calicin44-132 aa
PF01344Kelch_146-84 aa
PF25210Kelch_FKB9571-260 aa
PF01344Kelch_192-123 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G019760PF01344Kelch_15194.4e-0626.8
TkA04G019760PF07646Kelch_27210.05114.3
TkA04G019760PF07893DUF1668211970.03614.2
TkA04G019760PF07646Kelch_242850.05114.3
TkA04G019760PF13964Beta-prop_Calicin441321.2e-0525.2
TkA04G019760PF01344Kelch_146844.4e-0626.8
TkA04G019760PF25210Kelch_FKB95712601.4e-0525.6
TkA04G019760PF01344Kelch_1921234.4e-0626.8
TkA04G019760PF13964Beta-prop_Calicin1742581.2e-0525.2
TkA04G019760PF01344Kelch_11771934.4e-0626.8
TkA04G019760PF07646Kelch_21801890.05114.3
TkA04G019760PF01344Kelch_11982044.4e-0626.8
TkA04G019760PF07646Kelch_22172340.05114.3
TkA04G019760PF07646Kelch_22482570.05114.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GX29Arabidopsis thalianasp|Q8GX29|SKI25_ARATH F-box/kelch-repeat protein SKIP2550.700%Swiss-ProtHigh

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