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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G018040
Reference: TK1151 Chr: Chr04 Coordinates: 4534862-4537225 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1309 bp · TkA04G018040|TK1151|cDNA

TAAGGACCAGCAGTGAAAAAGAATTTGGTACTGGCCGATGGCTGCTAAGTTAAGCTATATGATAATGGCTTCCTCGCAGTAATGTCGAAAGCTCGGAGTCCATAGCAAGAATTAGGGTTTTGGTAACTCGATCTCTCCATCTTACCTTCATTATTGAAATCACAACAAGCTTCAAGCTGATACAGGAATGGCGATTGGTGGAAATTCGTTTGAAGTCAATCCCGAGACAGAGAAGTTTCTTTGCGAGCGATTGTTGGACC...

CDS

Download CDS FASTA

939 bp · TkA04G018040|TK1151|CDS

ATGGCGATTGGTGGAAATTCGTTTGAAGTCAATCCCGAGACAGAGAAGTTTCTTTGCGAGCGATTGTTGGACCAAACGCAGCCAATTTCGGAGCGATTCAGAGTCCTCTTCTCTCTCCGGAATCTTCGAGGCCCTGCCCCTCGCAATGCTCTAATCGTTGCAACAAAAGACTCTTCAAACCTACTGGCACATGAGGCTGCATTTGCTTTAGGTCAAATGCAAGATGCTGAAGCAATTCCTGCTTTAAAGCTTGTTCTTAA...

Protein

Download Protein FASTA

312 aa · TkA04G018040|TK1151|PROTEIN

MAIGGNSFEVNPETEKFLCERLLDQTQPISERFRVLFSLRNLRGPAPRNALIVATKDSSNLLAHEAAFALGQMQDAEAIPALKLVLNDLSLHPIVRHEAAEALGAIGLESNIALLNDCLDSDPAQEVRETCELALARIQELKNINGSHQSSTPSPFLSVDPAAPASCSSVQDLRELILNEEKGMYERYGALFGLRNHGGDEAVAAIVASLNAKSALLRHEVAYVLGQLQNKCASDALSRVLKDVNEHPMVRHEAAEALGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G018040
TK1151 IDTkA04G018040
OH-1004 IDLXL04_036900
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G018040
LocationChr04:4534862-4537225 (+)
DescriptionSimilar to At3g58180: Deoxyhypusine hydroxylase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g58180 Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0626100 Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor. No verified direct reference in this release
Os12g0163300 Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L-lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036900 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine Biological Process
GO:0005506 iron ion binding Molecular Function
GO:0016491 oxidoreductase activity Molecular Function
GO:0019135 deoxyhypusine monooxygenase activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G58180
dosa:Os12g0163300
rno:314644
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.683
Rank 1 · TkA04G018040 · TK1151
Nucleus0.529
Rank 2 · TkA04G018040 · TK1151
Mitochondrion0.083
Rank 3 · TkA04G018040 · TK1151
Cell membrane0.032
Rank 4 · TkA04G018040 · TK1151
Peroxisome0.029
Rank 5 · TkA04G018040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07571TAF6_C10-45 aa
PF29232HEAT_spiro14-88 aa
PF13646HEAT_217-87 aa
PF03130HEAT_PBS32-46 aa
PF02985HEAT50-74 aa
PF13513HEAT_EZ50-73 aa
PF13646HEAT_251-136 aa
PF20031DUF643762-73 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G018040PF07571TAF6_C10450.002818.1
TkA04G018040PF29232HEAT_spiro14884.5e-2279.2
TkA04G018040PF13646HEAT_217871.2e-32112.7
TkA04G018040PF03130HEAT_PBS32469e-2585.0
TkA04G018040PF02985HEAT50747.4e-0832.7
TkA04G018040PF13513HEAT_EZ50733.7e-0524.8
TkA04G018040PF13646HEAT_2511361.2e-32112.7
TkA04G018040PF20031DUF643762730.2412.0
TkA04G018040PF03130HEAT_PBS63889e-2585.0
TkA04G018040PF29232HEAT_spiro651364.5e-2279.2
TkA04G018040PF00514Arm741040.009716.6
TkA04G018040PF02985HEAT921067.4e-0832.7
TkA04G018040PF13513HEAT_EZ931383.7e-0524.8
TkA04G018040PF03130HEAT_PBS951209e-2585.0
TkA04G018040PF20031DUF6437961150.2412.0
TkA04G018040PF12717Cnd11101420.0005620.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94JW0Arabidopsis thalianasp|Q94JW0|DOHH_ARATH Deoxyhypusine hydroxylase71.100%Swiss-ProtHigh
Q2QLW3Oryza sativa subsp. japonicasp|Q2QLW3|DOHH2_ORYSJ Deoxyhypusine hydroxylase-B75.500%Swiss-ProtHigh
Q2QXB3Oryza sativa subsp. japonicasp|Q2QXB3|DOHH1_ORYSJ Deoxyhypusine hydroxylase-A68.500%Swiss-ProtHigh

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