TkA03G483760 | RubberDandelionOmics

Gene overview

TkA03G483760

Reference: TK1151 Chr: Chr03 Coordinates: 121025791-121029239 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2519 bp · TkA03G483760|TK1151|cDNA

ATATATTATAAATAAAAACATAAAAAAACATATCTTATATTTCGTATTGGGAAAGGGACAATTTAATCTTGAGGGTACGTCCACCATTGCCGACACCTTCTGTGTTCTCGTGGCCATCTCCTTTCCCTTTCCTCGCTTCATCATCTGTTTATGGTGTCTTGAAATCTTTCACTTTTCTGGTCGTTTAATTTCTGAGCGTGCAAGCCAAGAATGGTATTTTGGGTTTCATCATAGAAGTTAGGTATACTCGGTTTTCTTTA...

CDS

Download CDS FASTA

1905 bp · TkA03G483760|TK1151|CDS

ATGAAGATGAAGATGAAGATGAAAATTAGGATGCAGAAACCAGTGCTAGTGTTACTTTTTATAACGGTTCTTGCCCCCATTGTCCTTTACACTGATAGACTCGCTACATTTTCTTCGTTTTCTACAGCAGAATACGAATTGGAGCCTTCGACACTTTCATTGAATCGTGATGTCAGGCCCCAAAATTTACTTCATCAGGAGTTAACCGAAGCAAAAGAAGAACCGGTGGATAATGTTTATTTGGAAAATTTGACTAGATC...

Protein

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634 aa · TkA03G483760|TK1151|PROTEIN

MKMKMKMKIRMQKPVLVLLFITVLAPIVLYTDRLATFSSFSTAEYELEPSTLSLNRDVRPQNLLHQELTEAKEEPVDNVYLENLTRSIQRLDGERSRKTRQLNEESEQHDNIAIKQVTQGLHEADHSDKRHESTENQKLKMSEHKLLSTETETKQDGKSMEPTKTKIKKADESISTDTRVKYLKDQLIRGRIYLSLSATRTNSQFIRELRLRMKEVQRALGDATKDSDLPKNANEKLKAMEQTLAKGKQIQDDCTAVVKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G483760`
TK1151 ID	TkA03G483760
OH-1004 ID	LXL04_009945
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	90.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G483760

Location Chr03:121025791-121029239 (-)

Description Similar to GAUT4: Probable galacturonosyltransferase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47780`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At3g61130`	Involved in pectin biosynthesis.	Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase.2006 · DOI: 10.1073/pnas.0600120103
`At4g38270`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At2g46480`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At3g25140`	Alpha-1-4-D-galacturonosyltransferase involved in homogalacturonan (HGA) synthesis, a class of pectin which plays a role in cell adhesion.	QUASIMODO1 is expressed in vascular tissue of Arabidopsis thaliana inflorescence stems, and affects homogalacturonan and xylan biosynthesis.2005 · DOI: 10.1007/s00425-005-0008-z

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009945 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010289 homogalacturonan biosynthetic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

KEGG gene cross-reference

ath:AT2G30575

ath:AT2G46480

ath:AT3G61130

ath:AT4G38270

ath:AT5G47780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.761

Rank 1 · TkA03G483760 · TK1151

Endoplasmic reticulum0.117

Rank 2 · TkA03G483760 · TK1151

Extracellular0.082

Rank 3 · TkA03G483760 · TK1151

Cytoplasm0.077

Rank 4 · TkA03G483760 · TK1151

Cell membrane0.067

Rank 5 · TkA03G483760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10819DUF256467-92 aa

PF10819DUF2564100-146 aa

PF06103DUF948106-119 aa

PF25557GAUT_1113-147 aa

PF25557GAUT_1176-251 aa

PF10819DUF2564207-273 aa

PF06103DUF948227-268 aa

PF01501Glyco_transf_8298-607 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G483760	`PF10819`	DUF2564	67	92	7.5	7.7
TkA03G483760	`PF10819`	DUF2564	100	146	7.5	7.7
TkA03G483760	`PF06103`	DUF948	106	119	0.83	10.6
TkA03G483760	`PF25557`	GAUT_1	113	147	9.2e-30	103.4
TkA03G483760	`PF25557`	GAUT_1	176	251	9.2e-30	103.4
TkA03G483760	`PF10819`	DUF2564	207	273	7.5	7.7
TkA03G483760	`PF06103`	DUF948	227	268	0.83	10.6
TkA03G483760	`PF01501`	Glyco_transf_8	298	607	6.7e-82	275.6
TkA03G483760	`PF18404`	Glyco_transf_24	381	503	2.2e-07	31.3
TkA03G483760	`PF25557`	GAUT_1	420	440	9.2e-30	103.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZX7`	Arabidopsis thaliana	sp\|Q93ZX7\|GAUT4_ARATH Probable galacturonosyltransferase 4	60.700%	Swiss-Prot	High
`Q9LE59`	Arabidopsis thaliana	sp\|Q9LE59\|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase	58.800%	Swiss-Prot	High
`Q0WQD2`	Arabidopsis thaliana	sp\|Q0WQD2\|GAUT3_ARATH Probable galacturonosyltransferase 3	54.500%	Swiss-Prot	High
`Q9ZPZ1`	Arabidopsis thaliana	sp\|Q9ZPZ1\|GAUT2_ARATH Putative galacturonosyltransferase 2	49.100%	Swiss-Prot	Medium
`Q9LSG3`	Arabidopsis thaliana	sp\|Q9LSG3\|GAUT8_ARATH Galacturonosyltransferase 8	52.700%	Swiss-Prot	Medium

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