LXL04_009945 | RubberDandelionOmics

Gene overview

LXL04_009945

Reference: OH-1004 Chr: Chr02 Coordinates: 136505384-136508231 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2091 bp · LXL04_009945|LXL04_009945|OH1004|cDNA

atgaagatgaagatgaagatgaaaaTTAGGATGCAGAAACCAGTGCTAGTGTTACTTTTTATAACGGTTCTTGCCCCCATTGTCCTTTACACTGATAGACTCGCTACATTTTCTTCGTTTTGTAATGCCTCCTTTCTCTCTcagatcttcttcttcttaaaCTACTTTACAACTATCAAATCTGTGTCTAACccgtttctttttctttttcttcttcctgTAGCTACAGCAGAATACGAATTGGAGCCTTCGACACTTTC...

CDS

Download CDS FASTA

2091 bp · LXL04_009945|LXL04_009945|OH1004|CDS

ATGAAGATGAAGATGAAGATGAAAATTAGGATGCAGAAACCAGTGCTAGTGTTACTTTTTATAACGGTTCTTGCCCCCATTGTCCTTTACACTGATAGACTCGCTACATTTTCTTCGTTTTGTAATGCCTCCTTTCTCTCTCAGATCTTCTTCTTCTTAAACTACTTTACAACTATCAAATCTGTGTCTAACCCGTTTCTTTTTCTTTTTCTTCTTCCTGTAGCTACAGCAGAATACGAATTGGAGCCTTCGACACTTTC...

Protein

Download Protein FASTA

696 aa · LXL04_009945|LXL04_009945|OH1004|PROTEIN

MKMKMKMKIRMQKPVLVLLFITVLAPIVLYTDRLATFSSFCNASFLSQIFFFLNYFTTIKSVSNPFLFLFLLPVATAEYELEPSTLSLNRDVRPQNLLHQVGNTTNSLSEFGYLEKYSFIEAFNSCFQELTEAKEEPVDNVYLENLTRSIQRLDGERSRKTRQLNEESEQHDNIAIKQVTQGLHEADHSDKRHESTENQKLKMSEHKLLSTETETKQDGKSMEPTKTKIKKADESISTDTRVKYLKDQLIRGRIYLSLSA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009945`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009945

Location Chr02:136505384-136508231 (-)

Description Similar to GAUT4: Probable galacturonosyltransferase 4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47780`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At3g61130`	Involved in pectin biosynthesis.	Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase.2006 · DOI: 10.1073/pnas.0600120103
`At4g38270`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At2g46480`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At2g30575`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009945 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010289 homogalacturonan biosynthetic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

KEGG gene cross-reference

ath:AT2G30575

ath:AT2G46480

ath:AT3G61130

ath:AT4G38270

ath:AT5G47780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.644

Rank 1 · LXL04_009945 · OH-1004

Endoplasmic reticulum0.171

Rank 2 · LXL04_009945 · OH-1004

Cytoplasm0.097

Rank 3 · LXL04_009945 · OH-1004

Extracellular0.094

Rank 4 · LXL04_009945 · OH-1004

Cell membrane0.074

Rank 5 · LXL04_009945 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25557.3GAUT_1238-313 aa

PF01501.27Glyco_transf_8360-669 aa

PF18404.8Glyco_transf_24443-565 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009945	`PF25557.3`	GAUT_1	238	313	1.1e-29	103.3
LXL04_009945	`PF01501.27`	Glyco_transf_8	360	669	8.4e-82	275.2
LXL04_009945	`PF18404.8`	Glyco_transf_24	443	565	2.6e-07	31.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93ZX7`	Arabidopsis thaliana	Probable galacturonosyltransferase 4	68.739%	Swiss-Prot	strong database homology
`Q9LE59`	Arabidopsis thaliana	Polygalacturonate 4-alpha-galacturonosyltransferase	53.591%	Swiss-Prot	strong database homology
`Q0WQD2`	Arabidopsis thaliana	Probable galacturonosyltransferase 3	54.468%	Swiss-Prot	moderate database homology
`Q9ZPZ1`	Arabidopsis thaliana	Putative galacturonosyltransferase 2	49.134%	Swiss-Prot	moderate database homology
`Q8RXE1`	Arabidopsis thaliana	Probable galacturonosyltransferase 5	45.040%	Swiss-Prot	moderate database homology

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