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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G388850
Reference: TK1151 Chr: Chr03 Coordinates: 96289072-96291979 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1819 bp · TkA03G388850|TK1151|cDNA

CGACATCGTAGTGCGGATGACACTTTTCGCCCAAATTTATATCGAATACACAGTGAAGGGAGAAAACGATTCTAGGATTTCAAAGACTCGGACAACGCGGCGTCTATCTTCTTCGACCACAACGAGCTAGGGTTTCTTCTTTCTTTACCTCCTTCCAATCATCAAAATCGAACCCTAAATTCAAACCGATCTTCACTCACCCATTTCTTTCATCTCCCTTACAGAAAAACAGACGGAAGATCGTCATTTTTCTTCTTCTT...

CDS

Download CDS FASTA

1269 bp · TkA03G388850|TK1151|CDS

ATGGATGGAAGCCACCCTTTCGTTAATGGCGACGATGAGCAACTTCAATTTGACAACCTTAATCAAAACCATGAAGATTATGATGATAATGTAGATGATAGTGGTGGAGGCAATGAGATAAGACATTCAATCAATGACAGTAGTCGTGACTCTTCAGCAGGAAAACTATTTGTTGGAGGCATTGCCTGGGAGACTTCAGAAGAGTCCTTCAGCAATTACTTCAGCCATTATGGAGAGCTAACAGATTCTGTGATAATGAT...

Protein

Download Protein FASTA

422 aa · TkA03G388850|TK1151|PROTEIN

MDGSHPFVNGDDEQLQFDNLNQNHEDYDDNVDDSGGGNEIRHSINDSSRDSSAGKLFVGGIAWETSEESFSNYFSHYGELTDSVIMMDKISGRPRGFGFVTFADPADADKVLEQDHVIDGRPVEVKRTVPREDMQGGRGLSRTKKIFVGGIPLTLTEDDMREYFMSYGDIIEHQIMLDHITGRSRGFGFVTFDSEEAVDKIFADGQLHELGGKQVEIKRAEPKRAGGDFSYDNRSRRGGGGGGGGGGGGGGGGGSKAYGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G388850
TK1151 IDTkA03G388850
OH-1004 IDLXL04_008274
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 80.332 / OH-1004 64.695
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G388850
LocationChr03:96289072-96291979 (+)
DescriptionSimilar to RNP1: Heterogeneous nuclear ribonucleoprotein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g14300 Involved with pre-mRNA processing. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008274 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0008380 RNA splicing Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0048864 stem cell development Biological Process
GO:0051028 mRNA transport Biological Process
GO:1901000 regulation of response to salt stress Biological Process
GO:2000070 regulation of response to water deprivation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT4G14300
cel:CELE_R10E9.1
dme:Dmel_CG32169
hsa:124540
mmu:76626
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.648
Rank 1 · TkA03G388850 · TK1151
Nucleus0.452
Rank 2 · TkA03G388850 · TK1151
Cell membrane0.073
Rank 3 · TkA03G388850 · TK1151
Endoplasmic reticulum0.059
Rank 4 · TkA03G388850 · TK1151
Mitochondrion0.040
Rank 5 · TkA03G388850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24432DUF755542-62 aa
PF16367RRM_755-81 aa
PF00076RRM_156-122 aa
PF23085RRM_PARP14_359-126 aa
PF28441RRM_1160-129 aa
PF14703PHM7_cyt68-114 aa
PF14605Nup35_RRM_272-110 aa
PF08206OB_RNB89-109 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G388850PF24432DUF755542621.89.3
TkA03G388850PF16367RRM_755813.5e-1143.7
TkA03G388850PF00076RRM_1561223.1e-32111.0
TkA03G388850PF23085RRM_PARP14_3591267.2e-0936.3
TkA03G388850PF28441RRM_11601291.3e-0629.3
TkA03G388850PF14703PHM7_cyt681140.04214.8
TkA03G388850PF14605Nup35_RRM_2721108e-0523.2
TkA03G388850PF08206OB_RNB891090.01216.0
TkA03G388850PF24432DUF75551391511.89.3
TkA03G388850PF23085RRM_PARP14_31432187.2e-0936.3
TkA03G388850PF16367RRM_71442063.5e-1143.7
TkA03G388850PF00076RRM_11462153.1e-32111.0
TkA03G388850PF14605Nup35_RRM_21461978e-0523.2
TkA03G388850PF14703PHM7_cyt1461700.04214.8
TkA03G388850PF28441RRM_111492201.3e-0629.3
TkA03G388850PF08206OB_RNB1801960.01216.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W034Arabidopsis thalianasp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 151.100%Swiss-ProtLow

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