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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G227350
Reference: TK1151 Chr: Chr03 Coordinates: 56817176-56823241 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

807 bp · TkA03G227350|TK1151|cDNA

ATGGAAGAAGAAGTGATATTAAAGCGGAAACGGAAAAAGACATCTAAGATTTGGGACCATTTTACTATAGTGAACGTGTCTAGTATTGATTCAGGACAAAAGAAGCTTCCTACATTGATTAGGCCTGATAAGTATGATAGTAACAAAATGAGAGAAGCAATAGCTACTTGGGTAATGGGTACCGAGCAACCTTTTTCAGTTGTGGATGATGAGTTGTATGTGAATATGATGAAGACAGCTAGTCCTTTTTTCGAGAAATT...

CDS

Download CDS FASTA

1491 bp · TkA03G227350|TK1151|CDS

ATGGCGCCATTGATGCAGAGCTCTCAACCTTGGGTCGAGAAATATCGACCCAGGCGAGTAAAAGATGTTGCTCACCAAGACGAGGTTGTCCGAGTCCTCACCAACACGCTCGAGACCACCAATTGTCCGCACATGCTCTTTTATGGGCCACCTGGAACGGGGAAAACCACGACTGCCTTGGCCATCGCTCACCAGCTTTACGGTCCTGAGCTGTACAAGGCGAGGGTTCTTGAGCTGAATGCTAGTGATGAGCGTGGAAT...

Protein

Download Protein FASTA

496 aa · TkA03G227350|TK1151|PROTEIN

MAPLMQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKARVLELNASDERGINVVRTKIKNFAAVAVGSGQQGGYPCPPYKIIILDEADSMTEDAQAIFVLQNALRRTMETIIEPLASRCAKFRFKPLSEDIMSTRVLHISNEEGLNLDSEALSTLSSISQGDLRRAITFLQGAARLYGSSISSKDLISVSGVVPGEVVEALVGACKSGSFDCANKQVNNVIAEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G227350
TK1151 IDTkA03G227350
OH-1004 IDLXL04_007856
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G227350
LocationChr03:56817176-56823241 (-)
DescriptionNo functional description available
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g21690 May be involved in DNA replication and thus regulate cell proliferation. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0176500 May be involved in DNA replication and thus regulate cell proliferation. No verified direct reference in this release
Os03g0733400 Transposase-like protein that is essential for plant growth and development. No verified direct reference in this release
Os05g0239150 Transposase-like protein that is essential for plant growth and development. No verified direct reference in this release
Os05g0583200 Transposase-like protein that is essential for plant growth and development. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007856 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000076 DNA replication checkpoint signaling Biological Process
GO:0006260 DNA replication Biological Process
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006271 DNA strand elongation involved in DNA replication Biological Process
GO:0006272 leading strand elongation Biological Process
GO:0006281 DNA repair Biological Process
GO:1900264 positive regulation of DNA-directed DNA polymerase activity Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005663 DNA replication factor C complex Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0031389 Rad17 RFC-like complex Cellular Component
KEGG gene cross-reference
ath:AT1G21690
ddi:DDB_G0286027
dosa:Os12g0176500
hsa:5984
mmu:106344
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.384
Rank 1 · TkA03G227350 · TK1151
Plastid0.236
Rank 2 · TkA03G227350 · TK1151
Cytoplasm0.223
Rank 3 · TkA03G227350 · TK1151
Mitochondrion0.148
Rank 4 · TkA03G227350 · TK1151
Peroxisome0.046
Rank 5 · TkA03G227350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03215Rad177-64 aa
PF05496RuvB_N16-66 aa
PF04851ResIII24-68 aa
PF20030bpMoxR24-68 aa
PF05673DUF81525-83 aa
PF13177DNA_pol3_delta226-131 aa
PF25199nSTAND_NTPase526-84 aa
PF13191AAA_1628-83 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G227350PF03215Rad177642.2e-0525.2
TkA03G227350PF05496RuvB_N16665.2e-0523.8
TkA03G227350PF04851ResIII24680.005217.4
TkA03G227350PF20030bpMoxR24680.1711.7
TkA03G227350PF05673DUF81525830.1412.0
TkA03G227350PF13177DNA_pol3_delta2261310.00119.8
TkA03G227350PF25199nSTAND_NTPase526840.08413.4
TkA03G227350PF13191AAA_1628830.001419.9
TkA03G227350PF13086AAA_1139717.5e-0523.3
TkA03G227350PF12775AAA_739810.03214.5
TkA03G227350PF24883NPHP3_N40660.1413.1
TkA03G227350PF13401AAA_2241940.0001622.7
TkA03G227350PF13245AAA_1941660.1912.6
TkA03G227350PF01078Mg_chelatase42810.00916.1
TkA03G227350PF00270DEAD43650.05314.0
TkA03G227350PF07728AAA_5441340.002318.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93ZX1Arabidopsis thalianasp|Q93ZX1|RFC4_ARATH Replication factor C subunit 479.500%Swiss-ProtHigh
Q9FXM3Oryza sativa subsp. japonicasp|Q9FXM3|RFC2_ORYSJ Replication factor C subunit 280.200%Swiss-ProtHigh
Q6AVI0Oryza sativa subsp. japonicasp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 230.600%Swiss-ProtMedium
B9FJG3Oryza sativa subsp. japonicasp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 130.000%Swiss-ProtMedium
Q75HY5Oryza sativa subsp. japonicasp|Q75HY5|RSLE3_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 328.000%Swiss-ProtLow

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