LXL04_007856 | RubberDandelionOmics

Gene overview

LXL04_007856

Reference: OH-1004 Chr: Chr02 Coordinates: 66962429-66967584 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1491 bp · LXL04_007856|LXL04_007856|OH1004|cDNA

ATGGCGCCATTGATGCAGAGCTCTCAACCTTGGGTCGAGAAATATCGACCCAGGCGAGTAAAAGATGTTGCTCACCAAGACGAGGTTGTCCGAGTCCTCACCAACACGCTCGAGACCACCAATTGTCCGCACATGCTCTTTTATGGGCCACCTGGAACGGGGAAAACCACGACTGCCTTGGCCATCGCTCACCAGCTTTACGGTCCTGAGCTGTACAAGGCGAGGGTTCTTGAGCTGAATGCTAGTGATGAGCGTGGAAT...

CDS

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1491 bp · LXL04_007856|LXL04_007856|OH1004|CDS

ATGGCGCCATTGATGCAGAGCTCTCAACCTTGGGTCGAGAAATATCGACCCAGGCGAGTAAAAGATGTTGCTCACCAAGACGAGGTTGTCCGAGTCCTCACCAACACGCTCGAGACCACCAATTGTCCGCACATGCTCTTTTATGGGCCACCTGGAACGGGGAAAACCACGACTGCCTTGGCCATCGCTCACCAGCTTTACGGTCCTGAGCTGTACAAGGCGAGGGTTCTTGAGCTGAATGCTAGTGATGAGCGTGGAAT...

Protein

Download Protein FASTA

496 aa · LXL04_007856|LXL04_007856|OH1004|PROTEIN

MAPLMQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKARVLELNASDERGINVVRTKIKNFAAVAVGSGQQGGYPCPPYKIIILDEADSMTEDAQVVFVLQNALRRTMETIIEPLASRCAKFRFKPLSEDIMSTRVLHISNEEGLNLDSEALSTLSSISQGDLRRAITFLQGAARLYGSSISSKDLISVSGVVPGEVVEALVGACKSGSFDCANKQVNNVIAEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007856`
TK1151 ID	TkA03G227350
OH-1004 ID	LXL04_007856
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007856

Location Chr02:66962429-66967584 (-)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g21690`	May be involved in DNA replication and thus regulate cell proliferation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0176500`	May be involved in DNA replication and thus regulate cell proliferation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007856 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000076 DNA replication checkpoint signaling Biological Process

GO:0006260 DNA replication Biological Process

GO:0006261 DNA-templated DNA replication Biological Process

GO:0006271 DNA strand elongation involved in DNA replication Biological Process

GO:0006272 leading strand elongation Biological Process

GO:0006281 DNA repair Biological Process

GO:1900264 positive regulation of DNA-directed DNA polymerase activity Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005663 DNA replication factor C complex Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0031389 Rad17 RFC-like complex Cellular Component

KEGG gene cross-reference

ath:AT1G21690

ddi:DDB_G0286027

dosa:Os12g0176500

hsa:5984

mmu:106344

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.390

Rank 1 · LXL04_007856 · OH-1004

Cytoplasm0.224

Rank 2 · LXL04_007856 · OH-1004

Plastid0.223

Rank 3 · LXL04_007856 · OH-1004

Mitochondrion0.157

Rank 4 · LXL04_007856 · OH-1004

Peroxisome0.047

Rank 5 · LXL04_007856 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00004.36AAA45-146 aa

PF08542.17Rep_fac_C230-311 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007856	`PF00004.36`	AAA	45	146	2.4e-13	51.4
LXL04_007856	`PF08542.17`	Rep_fac_C	230	311	7.5e-20	71.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZX1`	Arabidopsis thaliana	Replication factor C subunit 4	74.164%	Swiss-Prot	moderate database homology
`Q9FXM3`	Oryza sativa subsp. japonica	Replication factor C subunit 2	75.229%	Swiss-Prot	moderate database homology

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