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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G200980
Reference: TK1151 Chr: Chr03 Coordinates: 50470203-50478338 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6973 bp · TkA03G200980|TK1151|cDNA

AAAGGAAATGATTGTTTTGATTTTGAGACAGCGTAGTAAAGAGCTGAAAAAAACCCACAGTGGAAAAGCAGCCTCGTTTCTCTCTCAATTGCCGACGGGGACCCGCTTTCACTACATTACATCTTGCAGGATACACCATTTGATGTTCCGAGTTCCAGACCACTCTTTGCGAGACAGCATTTTCGTTATGTATCTGTGTTAGCTGAGGAGGCTGCAAGGGGTACTTTCAAGTGAAGTATTGGTTCAAATGTCAAAATATC...

CDS

Download CDS FASTA

3231 bp · TkA03G200980|TK1151|CDS

ATGTCAAAATATCCCTTCCTTGATCCACCAGAAAATGCTGCATCTGGAAACAGGACATCAAATGGAAGCACCAAAGCAGACGATGCTGAAGAAACAATCTCCATGGTTGCTCAATTTCTCGAGCAACTCCATGGAAACATCTCTTCACCGCATGAAAAAGAAGCTATTACAACACAATTGCTCGCCATTGCTAAATCAAAAAAGGAGGCACGCTCTATCATAGGTTCACATTCTCAAGCAATGCCATTGTTCATATCCAT...

Protein

Download Protein FASTA

1076 aa · TkA03G200980|TK1151|PROTEIN

MSKYPFLDPPENAASGNRTSNGSTKADDAEETISMVAQFLEQLHGNISSPHEKEAITTQLLAIAKSKKEARSIIGSHSQAMPLFISILRTGTPLAKLNVAATLTALCKDEELRLKVLLGGCIPPLLSLLKSESTKSKMAAAEAIFEVSSGGLSDDHVGMKIFVTEGVVPTLWEQLTSKTRQDKVVVGFITGALRNLCGDKDGYWRVTLEAGGVDIIVRLLSSNNAAIQSNAASLLARLMLAFNNSMQKIIDSGAIEALLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G200980
TK1151 IDTkA03G200980
OH-1004 IDLXL04_007479
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)41.900
Protein coverage (%)TK1151 97.955 / OH-1004 49.609
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G200980
LocationChr03:50470203-50478338 (+)
DescriptionSimilar to CSI1: Protein CELLULOSE SYNTHASE INTERACTIVE 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g77460 Regulator of the microtubular cytoskeleton (By similarity).
Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis.2013 · DOI: 10.1105/tpc.113.116715
At1g44120 Regulator of the microtubular cytoskeleton. No verified direct reference in this release
At2g22125 Regulator of the microtubular cytoskeleton.
POM-POM2/cellulose synthase interacting1 is essential for the functional association of cellulose synthase and microtubules in Arabidopsis.2012 · DOI: 10.1105/tpc.111.093575
The Arabidopsis ARCP protein, CSI1, which is required for microtubule stability, is necessary for root and anther development.2012 · DOI: 10.1105/tpc.111.095059
Impaired cellulose synthase guidance leads to stem torsion and twists phyllotactic patterns in Arabidopsis.2013 · DOI: 10.1016/j.cub.2013.04.013
Cellulose synthase INTERACTIVE3 regulates cellulose biosynthesis in both a microtubule-dependent and microtubule-independent manner in Arabidopsis.2013 · DOI: 10.1105/tpc.113.116715
CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1.2015 · DOI: 10.1104/pp.114.249003

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007479 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0008360 regulation of cell shape Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009833 plant-type primary cell wall biogenesis Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0010208 pollen wall assembly Biological Process
GO:0010215 cellulose microfibril organization Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0030244 cellulose biosynthetic process Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0042742 defense response to bacterium Biological Process
KEGG gene cross-reference
ath:AT1G44120
ath:AT1G77460
ath:AT2G22125
ath:AT2G23140
ath:AT2G28830
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.470
Rank 1 · TkA03G200980 · TK1151
Nucleus0.435
Rank 2 · TkA03G200980 · TK1151
Cell membrane0.156
Rank 3 · TkA03G200980 · TK1151
Endoplasmic reticulum0.062
Rank 4 · TkA03G200980 · TK1151
Golgi apparatus0.045
Rank 5 · TkA03G200980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03224V-ATPase_H_N34-89 aa
PF20168PDS538-168 aa
PF11701UNC45-central39-77 aa
PF24768ARM_ARMC540-169 aa
PF21050ARMC9_ARM54-113 aa
PF16782SIL157-109 aa
PF25598ARM_PUB59-281 aa
PF13513HEAT_EZ72-105 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G200980PF03224V-ATPase_H_N34894.4e-0833.6
TkA03G200980PF20168PDS5381680.1610.4
TkA03G200980PF11701UNC45-central39770.2411.9
TkA03G200980PF24768ARM_ARMC5401694.1e-2382.9
TkA03G200980PF21050ARMC9_ARM541137.4e-0626.7
TkA03G200980PF16782SIL1571090.3111.0
TkA03G200980PF25598ARM_PUB592812.2e-1764.1
TkA03G200980PF13513HEAT_EZ721052.7e-0938.0
TkA03G200980PF00514Arm771072.5e-34116.9
TkA03G200980PF23271HEAT_GCN1801450.009516.8
TkA03G200980PF02985HEAT821085.9e-0523.7
TkA03G200980PF13646HEAT_2831441.4e-1248.4
TkA03G200980PF13513HEAT_EZ991432.7e-0938.0
TkA03G200980PF28415SIL1_FES1_HPBP1_C1051481.8e-0938.1
TkA03G200980PF00514Arm1201452.5e-34116.9
TkA03G200980PF21419RoxA-like_Cyt-c1201330.1312.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I718Arabidopsis thalianasp|F4I718|CSI3_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 356.600%Swiss-ProtHigh
Q9C6Y4Arabidopsis thalianasp|Q9C6Y4|CSI2_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 244.800%Swiss-ProtMedium
F4IIM1Arabidopsis thalianasp|F4IIM1|CSI1_ARATH Protein CELLULOSE SYNTHASE INTERACTIVE 140.600%Swiss-ProtMedium

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