RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G180010
Reference: TK1151 Chr: Chr03 Coordinates: 45420168-45421253 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1050 bp · TkA03G180010|TK1151|cDNA

ATGGATCCCGACGGACTTCCTCAGCCGCTCATCAACCTCTCAAAGGTACAATCACGAATGGACCACATCCACCGCTTCCTCTCCGCTTCACTCAACTCCAATTCCATCATTGGAGAATCGCAGATGGATATTGTCTCTAAGGAGATCGCATCCGCAATCAACCAAGTAATTGTCAACGGAGCTGCCCTCCTTTCCTGCACTGGACTCCCAAAATCAAAATCGGAAACCCCAAACCTTTCCTTACCGGAATCTGATTTGGG...

CDS

Download CDS FASTA

1050 bp · TkA03G180010|TK1151|CDS

ATGGATCCCGACGGACTTCCTCAGCCGCTCATCAACCTCTCAAAGGTACAATCACGAATGGACCACATCCACCGCTTCCTCTCCGCTTCACTCAACTCCAATTCCATCATTGGAGAATCGCAGATGGATATTGTCTCTAAGGAGATCGCATCCGCAATCAACCAAGTAATTGTCAACGGAGCTGCCCTCCTTTCCTGCACTGGACTCCCAAAATCAAAATCGGAAACCCCAAACCTTTCCTTACCGGAATCTGATTTGGG...

Protein

Download Protein FASTA

349 aa · TkA03G180010|TK1151|PROTEIN

MDPDGLPQPLINLSKVQSRMDHIHRFLSASLNSNSIIGESQMDIVSKEIASAINQVIVNGAALLSCTGLPKSKSETPNLSLPESDLGLNHSKHDVELGFAKIEVFGEEAGDDWDIVELDAVELLAEHLHFCDLCGKGFKRDANLRMHMRAHGNKFKTLEALAKPEKSGLSSSSESTRGGRTRFSCPFAGCTRNKLHKKFRPLKSVICVKNHFKRSHCPKMYSCNRCHKKNFSVLADLKSHLKHCGETKWKCSCGTSFSRK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G180010
TK1151 IDTkA03G180010
OH-1004 IDLXL04_007470
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.400
Protein coverage (%)TK1151 100.000 / OH-1004 93.282
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G180010
LocationChr03:45420168-45421253 (-)
DescriptionSimilar to STOP1: Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g34370 Probable transcription factor.
Zinc finger protein STOP1 is critical for proton tolerance in Arabidopsis and coregulates a key gene in aluminum tolerance.2007 · DOI: 10.1073/pnas.0700117104
Aluminum-activated citrate and malate transporters from the MATE and ALMT families function independently to confer Arabidopsis aluminum tolerance.2009 · DOI: 10.1111/j.1365-313x.2008.03696.x
STOP1 regulates multiple genes that protect arabidopsis from proton and aluminum toxicities.2009 · DOI: 10.1104/pp.108.134700
STOP2 activates transcription of several genes for Al- and low pH-tolerance that are regulated by STOP1 in Arabidopsis.2014 · DOI: 10.1093/mp/sst116
At5g22890 Probable transcription factor.
STOP2 activates transcription of several genes for Al- and low pH-tolerance that are regulated by STOP1 in Arabidopsis.2014 · DOI: 10.1093/mp/sst116

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0871200 Probable transcription factor that may be involved in aluminum tolerance. No verified direct reference in this release
Os12g0170400 Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007470 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009937 regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0010029 regulation of seed germination Biological Process
GO:0010044 response to aluminum ion Biological Process
GO:0010431 seed maturation Biological Process
GO:0010447 response to acidic pH Biological Process
GO:0042542 response to hydrogen peroxide Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0071453 cellular response to oxygen levels Biological Process
GO:0071472 cellular response to salt stress Biological Process
KEGG gene cross-reference
ath:AT1G34370
ath:AT5G22890
ath:AT5G66730
dosa:Os01g0871200
dosa:Os12g0170400
osa:4324940
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.980
Rank 1 · TkA03G180010 · TK1151
Cytoplasm0.074
Rank 2 · TkA03G180010 · TK1151
Cell membrane0.020
Rank 3 · TkA03G180010 · TK1151
Endoplasmic reticulum0.015
Rank 4 · TkA03G180010 · TK1151
Plastid0.009
Rank 5 · TkA03G180010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26183Ig_NUP210_14th30-58 aa
PF17003Actin_micro117-151 aa
PF00096zf-C2H2129-151 aa
PF13912zf-C2H2_6129-151 aa
PF13894zf-C2H2_4130-151 aa
PF12874zf-met130-149 aa
PF22992C2CH-4th_BIRD-IDD131-140 aa
PF22995C2CH-3rd_BIRD-IDD131-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G180010PF26183Ig_NUP210_14th30580.2812.2
TkA03G180010PF17003Actin_micro1171516.16.7
TkA03G180010PF00096zf-C2H21291516.5e-0523.9
TkA03G180010PF13912zf-C2H2_61291510.003318.1
TkA03G180010PF13894zf-C2H2_41301510.009117.3
TkA03G180010PF12874zf-met1301490.01116.8
TkA03G180010PF22992C2CH-4th_BIRD-IDD1311406.4e-0523.5
TkA03G180010PF22995C2CH-3rd_BIRD-IDD1311490.000122.6
TkA03G180010PF23118zf-C2H2_STOP2_C1341483.2e-2072.1
TkA03G180010PF20499DUF67291812520.3411.2
TkA03G180010PF23115zf-C2H2_STOP2_3rd1832179.3e-2071.1
TkA03G180010PF00096zf-C2H21831926.5e-0523.9
TkA03G180010PF13894zf-C2H2_42072160.009117.3
TkA03G180010PF22995C2CH-3rd_BIRD-IDD2162210.000122.6
TkA03G180010PF17003Actin_micro2192626.16.7
TkA03G180010PF00096zf-C2H22212426.5e-0523.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C8N5Arabidopsis thalianasp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 163.300%Swiss-ProtLow
Q0WT24Arabidopsis thalianasp|Q0WT24|STOP2_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 260.700%Swiss-ProtLow
Q943I6Oryza sativa subsp. japonicasp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog64.000%Swiss-ProtLow
Q2QX40Oryza sativa subsp. japonicasp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR354.200%Swiss-ProtLow

JBrowse

View in Genome Browser