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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G012950
Reference: TK1151 Chr: Chr03 Coordinates: 3363183-3367830 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1594 bp · TkA03G012950|TK1151|cDNA

TCAAACTAGAAGGTTGACAGTGCCAATCTTTCAAAAAACAATGGAGCATAATGCAAATCATCTGTATAAATTGCAAGGGCCTCTTTCTCCATCAACTCTGGTTGCAAAACTGAGAAAAAAAACGACCAGTCCCACACCGCCGGGATCTATATTTCCGGTGAATTCCCTACTGTCTCCGGTCATACATATTCTCTACCCACATATAAACACAAAATTCTAAGTTTCCTGTTCGATTCACTAGGGAAAGTAGTCTAGACAGT...

CDS

Download CDS FASTA

840 bp · TkA03G012950|TK1151|CDS

ATGGAATCTGGTCGTCTTTTTTTTGGTTCCAACAGTAACAACATGCTTTTCCTCGGGAATGGAGACAACTATTTTAGCGGAACGAGAATGGGGTTCAACATGGAAGAATCTTCGAAGAAGAGGCCATTTTTGAGCTCGATCGATGACATGATGGAAGACGAATACTACGACGAACAATTGACGGAAAAGAAACGGCGTCTCAGCCCCGAACAGGTACACATGCTGGAACAAAGCTTTGAGGAAGACAACAAACTGGAGCC...

Protein

Download Protein FASTA

279 aa · TkA03G012950|TK1151|PROTEIN

MESGRLFFGSNSNNMLFLGNGDNYFSGTRMGFNMEESSKKRPFLSSIDDMMEDEYYDEQLTEKKRRLSPEQVHMLEQSFEEDNKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKTLERDYDRLKSSYDILTSDFDSIVKENEKLKAEVISLTEKLQSKEAVTDDQDTDIAAEEAGSGHVPPLSTTVKLEDHLSTGSGAGSAVVDDLDGPQLVDSGDSYFPETNEYTHEYAAAPVDQSEEDDGSDDGQKNFEYQFAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G012950
TK1151 IDTkA03G012950
OH-1004 IDLXL04_008618
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)50.300
Protein coverage (%)TK1151 51.613 / OH-1004 45.846
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G012950
LocationChr03:3363183-3367830 (+)
DescriptionSimilar to HAT5: Homeobox-leucine zipper protein HAT5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g01470 Probable transcription activator involved in leaf development.
Ectopic expression of the Arabidopsis transcriptional activator Athb-1 alters leaf cell fate in tobacco.1995 · DOI: 10.1105/tpc.7.11.1773

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0729700 Probable transcription factor. No verified direct reference in this release
UniProt: A2X980 Probable transcription factor. No verified direct reference in this release
Os08g0416000 Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. No verified direct reference in this release
UniProt: Q9XH36 Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008618 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009637 response to blue light Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009744 response to sucrose Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0017148 negative regulation of translation Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0048826 cotyledon morphogenesis Biological Process
GO:0080022 primary root development Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function
KEGG gene cross-reference
ath:AT1G69780
ath:AT3G01470
dosa:Os02g0729700
dosa:Os08g0481400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.980
Rank 1 · TkA03G012950 · TK1151
Cytoplasm0.079
Rank 2 · TkA03G012950 · TK1151
Cell membrane0.023
Rank 3 · TkA03G012950 · TK1151
Endoplasmic reticulum0.015
Rank 4 · TkA03G012950 · TK1151
Plastid0.011
Rank 5 · TkA03G012950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15934Yuri_gagarin35-161 aa
PF20733LRIM1_dimer43-86 aa
PF05103DivIVA58-86 aa
PF06156YabA59-89 aa
PF03432Relaxase60-97 aa
PF00046Homeodomain63-116 aa
PF28533DUF842963-70 aa
PF25450Rab11-FIP370-163 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G012950PF15934Yuri_gagarin351610.06913.7
TkA03G012950PF20733LRIM1_dimer43861.59.4
TkA03G012950PF05103DivIVA58860.2711.9
TkA03G012950PF06156YabA59890.09814.0
TkA03G012950PF03432Relaxase60970.09313.7
TkA03G012950PF00046Homeodomain631161.1e-1867.5
TkA03G012950PF28533DUF842963700.03214.8
TkA03G012950PF25450Rab11-FIP3701631.59.9
TkA03G012950PF04977DivIC83990.2711.7
TkA03G012950PF05920Homeobox_KN871143.3e-0524.3
TkA03G012950PF28533DUF84291151640.03214.8
TkA03G012950PF02183HALZ1181604e-1762.8
TkA03G012950PF06156YabA1181720.09814.0
TkA03G012950PF20733LRIM1_dimer1211751.59.4
TkA03G012950PF04977DivIC1221570.2711.7
TkA03G012950PF03432Relaxase1261760.09313.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q02283Arabidopsis thalianasp|Q02283|HAT5_ARATH Homeobox-leucine zipper protein HAT549.000%Swiss-ProtMedium
Q6YWR4Oryza sativa subsp. japonicasp|Q6YWR4|HOX16_ORYSJ Homeobox-leucine zipper protein HOX1651.500%Swiss-ProtHigh
A2X980Oryza sativa subsp. indicasp|A2X980|HOX16_ORYSI Homeobox-leucine zipper protein HOX1650.800%Swiss-ProtHigh
Q6ZA74Oryza sativa subsp. japonicasp|Q6ZA74|HOX5_ORYSJ Homeobox-leucine zipper protein HOX552.400%Swiss-ProtMedium
Q9XH36Oryza sativa subsp. indicasp|Q9XH36|HOX5_ORYSI Homeobox-leucine zipper protein HOX552.400%Swiss-ProtMedium

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