TkA03G007720 | RubberDandelionOmics

Gene overview

TkA03G007720

Reference: TK1151 Chr: Chr03 Coordinates: 1855778-1860122 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3163 bp · TkA03G007720|TK1151|cDNA

CCTTACACTCTCACTCTAAAAAACCCACAAAGGAAAAAATAAAAGAGACGGTCACTTCGCCCCCTGGTTTCTCTCTCTCCCTCCCTCTTTCTCTCTCTCTAAAGAGTCCCAGTTCAACTTTGCTTGCCATATATGCCGTACGATCATATAGTCGTCGCTCGAAGCCATCAGGAAGTTTCTACTGCGGCTCTGTCGTTCTCCGGTTACTGATTTCCTACGGTGTCAACCACTGCCTTGTTTCCACTTCACGAGCTTCAATT...

CDS

Download CDS FASTA

2202 bp · TkA03G007720|TK1151|CDS

ATGGCGAAGAAGGATAGGTTTCCTGATGCTTGTTCCGGTGGATTTCCTCCCAATGAGGAATCTGAAGGGTCGGGTGGTTCAGGACGTGATCATATGGAAACATCTGGCTATGAGAACTCAAGTGGCCCAAGAGAGAAATGGATAAAGTTAAGCTCTGCATTACACGATGGTTTTGGTGTCCCTATACAAAGTGTCCCCATTTCAAAACTTCCATCTTCCGAGAAACAAAAATGGTTACTACAATTGCGATCTGAACTTGA...

Protein

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733 aa · TkA03G007720|TK1151|PROTEIN

MAKKDRFPDACSGGFPPNEESEGSGGSGRDHMETSGYENSSGPREKWIKLSSALHDGFGVPIQSVPISKLPSSEKQKWLLQLRSELDLLRTFKKKVDTNRDRTHATMSSSSNIITSNKPQGNQPTSRKASDPQPRINPGIKRLQSVTERSSPETFTLVLRKQCENLLKKLMGHQHGWVFNKPVDVVALKIPDYFNVIKKPMDLGTIKEKLASSKYSSPFQFAADVRLTFSNAMTYNPPGNDVHIMADILSKFFELRWKPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G007720`
TK1151 ID	TkA03G007720
OH-1004 ID	LXL04_006059
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G007720

Location Chr03:1855778-1860122 (+)

Description Similar to GTE9: Transcription factor GTE9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g14270`	Transcription factor GTE9.	No verified direct reference in this release
`At3g27260`	Transcription factor GTE8.	No verified direct reference in this release
`At3g01770`	Transcription factor GTE11.	No verified direct reference in this release
`UniProt: Q9FGW9`	Acts as a negative regulator in plant response to changes in environmental conditions through the control of ABA-regulated gene expression.	No verified direct reference in this release
`At1g73150`	Probable transcription factor that binds to acetylated histone H3.	The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins.2008 · DOI: 10.1074/jbc.m708176200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006059 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006338 chromatin remodeling Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051365 cellular response to potassium ion starvation Biological Process

GO:0000785 chromatin Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G73150

ath:AT3G01770

ath:AT3G27260

ath:AT5G14270

ath:AT5G63320

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.967

Rank 1 · TkA03G007720 · TK1151

Cytoplasm0.092

Rank 2 · TkA03G007720 · TK1151

Cell membrane0.026

Rank 3 · TkA03G007720 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA03G007720 · TK1151

Plastid0.009

Rank 5 · TkA03G007720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18177La_HTH_kDCL66-97 aa

PF25156PNGase_A_C106-119 aa

PF20648DUF6809132-174 aa

PF00439Bromodomain163-247 aa

PF25156PNGase_A_C226-241 aa

PF20648DUF6809245-279 aa

PF17035BET313-376 aa

PF25156PNGase_A_C395-417 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G007720	`PF18177`	La_HTH_kDCL	66	97	0.086	13.7
TkA03G007720	`PF25156`	PNGase_A_C	106	119	1.9	9.3
TkA03G007720	`PF20648`	DUF6809	132	174	0.86	11.1
TkA03G007720	`PF00439`	Bromodomain	163	247	3.8e-22	78.8
TkA03G007720	`PF25156`	PNGase_A_C	226	241	1.9	9.3
TkA03G007720	`PF20648`	DUF6809	245	279	0.86	11.1
TkA03G007720	`PF17035`	BET	313	376	5.7e-13	49.5
TkA03G007720	`PF25156`	PNGase_A_C	395	417	1.9	9.3
TkA03G007720	`PF25156`	PNGase_A_C	441	470	1.9	9.3
TkA03G007720	`PF20648`	DUF6809	517	576	0.86	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93YS6`	Arabidopsis thaliana	sp\|Q93YS6\|GTE9_ARATH Transcription factor GTE9	46.200%	Swiss-Prot	Medium
`Q9LK27`	Arabidopsis thaliana	sp\|Q9LK27\|GTE8_ARATH Transcription factor GTE8	45.200%	Swiss-Prot	Medium
`Q93ZB7`	Arabidopsis thaliana	sp\|Q93ZB7\|GTE11_ARATH Transcription factor GTE11	45.500%	Swiss-Prot	Medium
`Q9FGW9`	Arabidopsis thaliana	sp\|Q9FGW9\|GTE10_ARATH Transcription factor GTE10	39.800%	Swiss-Prot	Medium
`Q9S7T1`	Arabidopsis thaliana	sp\|Q9S7T1\|GTE3_ARATH Transcription factor GTE3, chloroplastic	36.400%	Swiss-Prot	Low

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