LXL04_006059 | RubberDandelionOmics

Gene overview

LXL04_006059

Reference: OH-1004 Chr: Chr02 Coordinates: 1211878-1215261 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2202 bp · LXL04_006059|LXL04_006059|OH1004|cDNA

ATGGCGAAGAAGGATAGGTTTCCTGATGCTTGTTCCGGTGGATTTCCTCCCAATGAGGAATCTGAAGGGTCGGGTGGTTCAGGACGTGATCATATGGAAACATCTGGCTATGAGAACTCAAGTGGCCCAAGAGAGAAATGGATAAAGTTAAGCTCTGCATTACACGATGGTTTTGGTGTCCCTATACAAAGTGTCCCCATTTCAAAACTTCCATCTTCCGAGAAACAAAAATGGTTACTACAATTGCGATCTGAACTTGA...

CDS

Download CDS FASTA

2202 bp · LXL04_006059|LXL04_006059|OH1004|CDS

ATGGCGAAGAAGGATAGGTTTCCTGATGCTTGTTCCGGTGGATTTCCTCCCAATGAGGAATCTGAAGGGTCGGGTGGTTCAGGACGTGATCATATGGAAACATCTGGCTATGAGAACTCAAGTGGCCCAAGAGAGAAATGGATAAAGTTAAGCTCTGCATTACACGATGGTTTTGGTGTCCCTATACAAAGTGTCCCCATTTCAAAACTTCCATCTTCCGAGAAACAAAAATGGTTACTACAATTGCGATCTGAACTTGA...

Protein

Download Protein FASTA

733 aa · LXL04_006059|LXL04_006059|OH1004|PROTEIN

MAKKDRFPDACSGGFPPNEESEGSGGSGRDHMETSGYENSSGPREKWIKLSSALHDGFGVPIQSVPISKLPSSEKQKWLLQLRSELDLLRTFKKKVDTNRDRTHATMSSSSNIITSNKPQGNQPTSRKASDPQPRINPGIKRLQSVTERSSPETFTLVLRKQCENLLKKLMGHQHGWVFNKPVDVVALKIPDYFNVIKKPMDLGTIKEKLASSKYSSPFQFAADVRLTFSNAMTYNPPGNDVHIMADILSKFFELRWKPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006059`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006059

Location Chr02:1211878-1215261 (+)

Description Similar to GTE9: Transcription factor GTE9

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g14270`	Transcription factor GTE9.	No verified direct reference in this release
`At3g01770`	Transcription factor GTE11.	No verified direct reference in this release
`At3g27260`	Transcription factor GTE8.	No verified direct reference in this release
`UniProt: Q9FGW9`	Acts as a negative regulator in plant response to changes in environmental conditions through the control of ABA-regulated gene expression.	No verified direct reference in this release
`At1g73150`	Probable transcription factor that binds to acetylated histone H3.	The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain GTE proteins.2008 · DOI: 10.1074/jbc.m708176200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006059 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006338 chromatin remodeling Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051365 cellular response to potassium ion starvation Biological Process

GO:0000785 chromatin Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G73150

ath:AT3G01770

ath:AT3G27260

ath:AT5G14270

ath:AT5G63320

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.967

Rank 1 · LXL04_006059 · OH-1004

Cytoplasm0.092

Rank 2 · LXL04_006059 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_006059 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_006059 · OH-1004

Plastid0.009

Rank 5 · LXL04_006059 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00439.31Bromodomain163-247 aa

PF17035.11BET313-376 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006059	`PF00439.31`	Bromodomain	163	247	3.8e-22	78.8
LXL04_006059	`PF17035.11`	BET	313	376	5.7e-13	49.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93YS6`	Arabidopsis thaliana	Transcription factor GTE9	45.518%	Swiss-Prot	moderate database homology
`Q93ZB7`	Arabidopsis thaliana	Transcription factor GTE11	45.062%	Swiss-Prot	moderate database homology
`Q9LK27`	Arabidopsis thaliana	Transcription factor GTE8	44.031%	Swiss-Prot	moderate database homology
`Q9FGW9`	Arabidopsis thaliana	Transcription factor GTE10	42.606%	Swiss-Prot	moderate database homology
`Q9S7T1`	Arabidopsis thaliana	Transcription factor GTE3, chloroplastic	38.132%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card